Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.9■□□□□ 0.62
Upf3aQ3ULJ3 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3aQ3ULJ3 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC18.9■□□□□ 0.62
Upf3aQ3ULJ3 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
Upf3aQ3ULJ3 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.9■□□□□ 0.62
Upf3aQ3ULJ3 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3aQ3ULJ3 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3aQ3ULJ3 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3aQ3ULJ3 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Upf3aQ3ULJ3 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
Upf3aQ3ULJ3 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Upf3aQ3ULJ3 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Gm10819-201ENSMUST00000099988 561 ntBASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.89■□□□□ 0.61
Upf3aQ3ULJ3 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Upf3aQ3ULJ3 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Gm10013-201ENSMUST00000106074 672 ntBASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Gm23634-201ENSMUST00000175071 91 ntBASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Gm10459-201ENSMUST00000202708 1155 ntBASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Gm4974-201ENSMUST00000209974 875 ntBASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Upf3aQ3ULJ3 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Gm7367-201ENSMUST00000057611 492 ntBASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Upf3aQ3ULJ3 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Gm2274-201ENSMUST00000184539 609 ntBASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Upf3aQ3ULJ3 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 BC021767-201ENSMUST00000126387 1716 ntBASIC18.84■□□□□ 0.61
Upf3aQ3ULJ3 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms