Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC22.9■■□□□ 1.26
Ddb1Q3U1J4 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddb1Q3U1J4 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddb1Q3U1J4 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ddb1Q3U1J4 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Ddb1Q3U1J4 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Ddb1Q3U1J4 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
Ddb1Q3U1J4 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Ddb1Q3U1J4 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.26
Ddb1Q3U1J4 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC22.89■■□□□ 1.25
Ddb1Q3U1J4 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
Ddb1Q3U1J4 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
Ddb1Q3U1J4 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC22.89■■□□□ 1.25
Ddb1Q3U1J4 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
Ddb1Q3U1J4 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Gm24841-201ENSMUST00000158676 357 ntBASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Ddb1Q3U1J4 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddb1Q3U1J4 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddb1Q3U1J4 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddb1Q3U1J4 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddb1Q3U1J4 Gm18958-201ENSMUST00000174258 762 ntBASIC22.87■■□□□ 1.25
Ddb1Q3U1J4 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddb1Q3U1J4 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
Ddb1Q3U1J4 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ddb1Q3U1J4 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC22.87■■□□□ 1.25
Ddb1Q3U1J4 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC22.87■■□□□ 1.25
Ddb1Q3U1J4 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Gm7213-201ENSMUST00000215977 950 ntBASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Ddb1Q3U1J4 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Ddb1Q3U1J4 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC22.85■■□□□ 1.25
Ddb1Q3U1J4 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
Ddb1Q3U1J4 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC22.85■■□□□ 1.25
Ddb1Q3U1J4 Gm18688-201ENSMUST00000204695 1859 ntBASIC22.85■■□□□ 1.25
Ddb1Q3U1J4 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Ddb1Q3U1J4 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Ddb1Q3U1J4 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Ddb1Q3U1J4 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
Ddb1Q3U1J4 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Ddb1Q3U1J4 Gm15853-202ENSMUST00000195518 2041 ntBASIC22.84■■□□□ 1.25
Ddb1Q3U1J4 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Gm11355-201ENSMUST00000121120 306 ntBASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Mir3081-201ENSMUST00000175305 84 ntBASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Ddb1Q3U1J4 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Ddb1Q3U1J4 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
Ddb1Q3U1J4 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Ddb1Q3U1J4 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Ddb1Q3U1J4 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC22.81■■□□□ 1.24
Ddb1Q3U1J4 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Ddb1Q3U1J4 Gm11950-201ENSMUST00000121615 838 ntBASIC22.81■■□□□ 1.24
Ddb1Q3U1J4 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC22.81■■□□□ 1.24
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms