Protein–RNA interactions for Protein: P48754

Brca1, Breast cancer type 1 susceptibility protein homolog, mousemouse

Predictions only

Length 1,812 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brca1P48754 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC20.29■□□□□ 0.84
Brca1P48754 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Brca1P48754 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Brca1P48754 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Brca1P48754 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC20.29■□□□□ 0.84
Brca1P48754 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Brca1P48754 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Brca1P48754 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Brca1P48754 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Brca1P48754 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC20.28■□□□□ 0.84
Brca1P48754 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Brca1P48754 Gm25925-201ENSMUST00000158314 306 ntBASIC20.28■□□□□ 0.84
Brca1P48754 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC20.28■□□□□ 0.84
Brca1P48754 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Brca1P48754 Gm27357-201ENSMUST00000183754 135 ntBASIC20.28■□□□□ 0.84
Brca1P48754 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Brca1P48754 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Brca1P48754 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Brca1P48754 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Brca1P48754 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.28■□□□□ 0.84
Brca1P48754 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brca1P48754 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brca1P48754 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brca1P48754 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
Brca1P48754 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brca1P48754 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brca1P48754 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brca1P48754 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Brca1P48754 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Brca1P48754 Mir1668-201ENSMUST00000184114 107 ntBASIC20.27■□□□□ 0.84
Brca1P48754 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC20.27■□□□□ 0.84
Brca1P48754 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brca1P48754 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brca1P48754 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Brca1P48754 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brca1P48754 Gm17808-201ENSMUST00000200859 894 ntBASIC20.26■□□□□ 0.83
Brca1P48754 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
Brca1P48754 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brca1P48754 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brca1P48754 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brca1P48754 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Brca1P48754 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Brca1P48754 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brca1P48754 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.25■□□□□ 0.83
Brca1P48754 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brca1P48754 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Brca1P48754 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Brca1P48754 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Brca1P48754 AC164629.2-201ENSMUST00000217916 270 ntBASIC20.25■□□□□ 0.83
Brca1P48754 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brca1P48754 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brca1P48754 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.24■□□□□ 0.83
Brca1P48754 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
Brca1P48754 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brca1P48754 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC20.24■□□□□ 0.83
Brca1P48754 Gm7791-201ENSMUST00000219066 539 ntBASIC20.24■□□□□ 0.83
Brca1P48754 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brca1P48754 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brca1P48754 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Brca1P48754 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brca1P48754 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brca1P48754 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brca1P48754 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brca1P48754 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Brca1P48754 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Brca1P48754 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brca1P48754 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brca1P48754 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Brca1P48754 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brca1P48754 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
Brca1P48754 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brca1P48754 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brca1P48754 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Brca1P48754 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brca1P48754 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brca1P48754 Gm9731-201ENSMUST00000209480 747 ntBASIC20.23■□□□□ 0.83
Brca1P48754 Mzt1-203ENSMUST00000227948 952 ntBASIC20.23■□□□□ 0.83
Brca1P48754 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Brca1P48754 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Brca1P48754 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Brca1P48754 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brca1P48754 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Brca1P48754 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brca1P48754 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brca1P48754 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Brca1P48754 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Brca1P48754 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Brca1P48754 Gm24841-201ENSMUST00000158676 357 ntBASIC20.21■□□□□ 0.83
Brca1P48754 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Brca1P48754 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Brca1P48754 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC20.21■□□□□ 0.83
Brca1P48754 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Brca1P48754 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Brca1P48754 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Brca1P48754 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC20.21■□□□□ 0.83
Brca1P48754 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Brca1P48754 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC20.2■□□□□ 0.82
Brca1P48754 Gm37025-201ENSMUST00000195159 829 ntBASIC20.2■□□□□ 0.82
Brca1P48754 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC20.2■□□□□ 0.82
Brca1P48754 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms