Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Chd3B1AR17 Mir2861-201ENSMUST00000175539 82 ntBASIC17.6■□□□□ 0.41
Chd3B1AR17 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chd3B1AR17 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chd3B1AR17 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chd3B1AR17 Grk6-206ENSMUST00000224995 2971 ntBASIC17.6■□□□□ 0.41
Chd3B1AR17 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chd3B1AR17 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.59■□□□□ 0.41
Chd3B1AR17 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.59■□□□□ 0.41
Chd3B1AR17 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Chd3B1AR17 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC17.59■□□□□ 0.41
Chd3B1AR17 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC17.59■□□□□ 0.41
Chd3B1AR17 Gm3375-201ENSMUST00000203929 796 ntBASIC17.59■□□□□ 0.41
Chd3B1AR17 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC17.59■□□□□ 0.41
Chd3B1AR17 AC130671.1-201ENSMUST00000227384 1237 ntBASIC17.59■□□□□ 0.41
Chd3B1AR17 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Chd3B1AR17 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Chd3B1AR17 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC17.58■□□□□ 0.41
Chd3B1AR17 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
Chd3B1AR17 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.58■□□□□ 0.41
Chd3B1AR17 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Chd3B1AR17 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Chd3B1AR17 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
Chd3B1AR17 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chd3B1AR17 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Chd3B1AR17 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Chd3B1AR17 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chd3B1AR17 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chd3B1AR17 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Chd3B1AR17 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chd3B1AR17 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Chd3B1AR17 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Chd3B1AR17 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Chd3B1AR17 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Chd3B1AR17 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Chd3B1AR17 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Chd3B1AR17 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.57■□□□□ 0.4
Chd3B1AR17 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.57■□□□□ 0.4
Chd3B1AR17 AC156016.1-201ENSMUST00000227190 1035 ntBASIC17.57■□□□□ 0.4
Chd3B1AR17 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.57■□□□□ 0.4
Chd3B1AR17 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Chd3B1AR17 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Chd3B1AR17 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC17.56■□□□□ 0.4
Chd3B1AR17 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Chd3B1AR17 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Gm35558-201ENSMUST00000222675 2219 ntBASIC17.56■□□□□ 0.4
Chd3B1AR17 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Chd3B1AR17 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Chd3B1AR17 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC17.56■□□□□ 0.4
Chd3B1AR17 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Chd3B1AR17 Otx2os1-204ENSMUST00000227221 751 ntBASIC17.56■□□□□ 0.4
Chd3B1AR17 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Chd3B1AR17 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chd3B1AR17 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.55■□□□□ 0.4
Chd3B1AR17 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chd3B1AR17 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Chd3B1AR17 Gm5112-201ENSMUST00000204407 2368 ntBASIC17.55■□□□□ 0.4
Chd3B1AR17 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms