Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm23011-202ENSMUST00000197855 275 ntBASIC9.15□□□□□ -0.94
Cux1P53564 Gm2762-204ENSMUST00000201815 537 ntTSL 3 BASIC9.15□□□□□ -0.94
Cux1P53564 Klk1b9-201ENSMUST00000081399 870 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Cux1P53564 Defa36-201ENSMUST00000095424 420 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Cux1P53564 Tbc1d23-201ENSMUST00000023431 3690 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Cux1P53564 Gm14391-203ENSMUST00000109056 1956 ntTSL 3 BASIC9.15□□□□□ -0.94
Cux1P53564 Lig4-202ENSMUST00000170033 3105 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Cux1P53564 Sytl2-203ENSMUST00000107211 3790 ntAPPRIS P4 TSL 1 (best) BASIC9.15□□□□□ -0.94
Cux1P53564 Gm38096-201ENSMUST00000193692 2389 ntBASIC9.15□□□□□ -0.94
Cux1P53564 Sin3a-204ENSMUST00000167715 4961 ntAPPRIS P3 TSL 5 BASIC9.15□□□□□ -0.94
Cux1P53564 Med12-204ENSMUST00000117706 6940 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.94
Cux1P53564 Hrh2-202ENSMUST00000209846 4074 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.94
Cux1P53564 AC151984.1-201ENSMUST00000218261 2976 ntBASIC9.15□□□□□ -0.95
Cux1P53564 1700093K21Rik-204ENSMUST00000169264 1320 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.95
Cux1P53564 Aldh1l2-201ENSMUST00000020497 6027 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
Cux1P53564 Gm13579-201ENSMUST00000118519 517 ntBASIC9.15□□□□□ -0.95
Cux1P53564 Gm14175-201ENSMUST00000119835 241 ntBASIC9.15□□□□□ -0.95
Cux1P53564 Gm6305-201ENSMUST00000121027 1012 ntBASIC9.15□□□□□ -0.95
Cux1P53564 Smt3h2-ps-201ENSMUST00000121084 285 ntBASIC9.15□□□□□ -0.95
Cux1P53564 Gm14302-201ENSMUST00000122806 382 ntTSL 3 BASIC9.15□□□□□ -0.95
Cux1P53564 Gm14233-201ENSMUST00000149576 439 ntTSL 3 BASIC9.15□□□□□ -0.95
Cux1P53564 Gm26486-201ENSMUST00000158021 110 ntBASIC9.15□□□□□ -0.95
Cux1P53564 Dctd-206ENSMUST00000174379 381 ntTSL 3 BASIC9.15□□□□□ -0.95
Cux1P53564 Gm29124-201ENSMUST00000186576 452 ntBASIC9.15□□□□□ -0.95
Cux1P53564 Gm8325-202ENSMUST00000193411 182 ntTSL 1 (best) BASIC9.15□□□□□ -0.95
Cux1P53564 Gm37308-201ENSMUST00000194684 100 ntBASIC9.15□□□□□ -0.95
Cux1P53564 Gm43078-201ENSMUST00000197222 168 ntBASIC9.15□□□□□ -0.95
Cux1P53564 Igkv4-56-201ENSMUST00000198436 349 ntBASIC9.15□□□□□ -0.95
Cux1P53564 4930591A17Rik-201ENSMUST00000041998 737 ntTSL 1 (best) BASIC9.15□□□□□ -0.95
Cux1P53564 Gm34777-201ENSMUST00000219688 2505 ntTSL 5 BASIC9.14□□□□□ -0.95
Cux1P53564 Chl1-206ENSMUST00000205098 2464 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 Zfp934-203ENSMUST00000220648 2439 ntTSL 5 BASIC9.14□□□□□ -0.95
Cux1P53564 A930006L05Rik-201ENSMUST00000186821 2814 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 Trmt10a-206ENSMUST00000162864 4064 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 Gm44113-201ENSMUST00000203510 3041 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 9830132P13Rik-201ENSMUST00000198240 4187 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 Rnd3-203ENSMUST00000154545 2967 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 Nol8-205ENSMUST00000222197 4368 ntAPPRIS P2 TSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 Focad-208ENSMUST00000159342 5456 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 Olfr348-204ENSMUST00000215199 3557 ntAPPRIS P1 TSL 3 BASIC9.14□□□□□ -0.95
Cux1P53564 Agxt2-203ENSMUST00000110541 1222 ntTSL 2 BASIC9.14□□□□□ -0.95
Cux1P53564 Gm13259-201ENSMUST00000120792 456 ntBASIC9.14□□□□□ -0.95
Cux1P53564 Vmn1r-ps107-201ENSMUST00000121458 581 ntBASIC9.14□□□□□ -0.95
Cux1P53564 Gm6009-201ENSMUST00000210848 280 ntBASIC9.14□□□□□ -0.95
Cux1P53564 Gm45777-201ENSMUST00000213009 301 ntBASIC9.14□□□□□ -0.95
Cux1P53564 AC091783.2-201ENSMUST00000224626 740 ntBASIC9.14□□□□□ -0.95
Cux1P53564 AC123665.6-201ENSMUST00000228568 538 ntBASIC9.14□□□□□ -0.95
Cux1P53564 Pmis2-201ENSMUST00000051495 699 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 Golga3-201ENSMUST00000031477 4805 ntAPPRIS ALT2 TSL 5 BASIC9.14□□□□□ -0.95
Cux1P53564 Nol8-203ENSMUST00000221142 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 Onecut2-201ENSMUST00000115145 13389 ntAPPRIS P2 TSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 Onecut2-202ENSMUST00000175965 13391 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
Cux1P53564 Gm37880-201ENSMUST00000192216 3257 ntBASIC9.14□□□□□ -0.95
Cux1P53564 Zzz3-210ENSMUST00000200570 2491 ntAPPRIS ALT2 TSL 5 BASIC9.14□□□□□ -0.95
Cux1P53564 Aox1-201ENSMUST00000001027 4423 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm37206-201ENSMUST00000195512 3069 ntBASIC9.13□□□□□ -0.95
Cux1P53564 Sptssb-201ENSMUST00000051239 1795 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Vmn1r45-204ENSMUST00000227426 3205 ntAPPRIS P1 BASIC9.13□□□□□ -0.95
Cux1P53564 Pcdh15-214ENSMUST00000129404 6857 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
Cux1P53564 Acad11-202ENSMUST00000120854 3108 ntTSL 5 BASIC9.13□□□□□ -0.95
Cux1P53564 Gm42613-201ENSMUST00000199975 1931 ntBASIC9.13□□□□□ -0.95
Cux1P53564 Skint8-201ENSMUST00000106572 1290 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
Cux1P53564 Gm12405-201ENSMUST00000141120 660 ntTSL 3 BASIC9.13□□□□□ -0.95
Cux1P53564 Gm23233-201ENSMUST00000157301 137 ntBASIC9.13□□□□□ -0.95
Cux1P53564 Mir7685-201ENSMUST00000183555 62 ntBASIC9.13□□□□□ -0.95
Cux1P53564 Gm21842-202ENSMUST00000185311 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm29285-201ENSMUST00000185500 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm21801-202ENSMUST00000185537 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28312-201ENSMUST00000185976 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm29213-201ENSMUST00000186199 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm21428-201ENSMUST00000186550 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm29370-201ENSMUST00000186581 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28604-201ENSMUST00000186629 484 ntBASIC9.13□□□□□ -0.95
Cux1P53564 Gm21633-202ENSMUST00000186630 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28890-201ENSMUST00000186686 173 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28092-201ENSMUST00000186709 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28566-201ENSMUST00000186714 484 ntBASIC9.13□□□□□ -0.95
Cux1P53564 Gm21572-202ENSMUST00000186850 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm21916-202ENSMUST00000187044 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm29839-201ENSMUST00000187045 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28442-201ENSMUST00000187052 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm21780-202ENSMUST00000187110 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm29656-201ENSMUST00000187236 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm21821-202ENSMUST00000187288 175 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28886-201ENSMUST00000187350 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm21599-202ENSMUST00000187381 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28128-201ENSMUST00000187403 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm21450-201ENSMUST00000187408 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28194-201ENSMUST00000187412 484 ntBASIC9.13□□□□□ -0.95
Cux1P53564 Gm28689-201ENSMUST00000187441 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28851-201ENSMUST00000187800 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28886-202ENSMUST00000187889 484 ntBASIC9.13□□□□□ -0.95
Cux1P53564 Gm28554-201ENSMUST00000187964 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Mrgpra18-ps-201ENSMUST00000188059 907 ntBASIC9.13□□□□□ -0.95
Cux1P53564 Gm28984-201ENSMUST00000188202 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm21529-202ENSMUST00000188473 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28604-202ENSMUST00000188638 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm21588-202ENSMUST00000188721 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm21539-202ENSMUST00000188764 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Cux1P53564 Gm28216-201ENSMUST00000188785 174 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 74.2 ms