Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Ccdc28aQ8CEI3 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Ccdc28aQ8CEI3 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Ccdc28aQ8CEI3 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Ccdc28aQ8CEI3 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Ccdc28aQ8CEI3 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Gm13534-201ENSMUST00000121169 513 ntBASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Gm9988-201ENSMUST00000069786 435 ntBASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ccdc28aQ8CEI3 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28aQ8CEI3 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28aQ8CEI3 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28aQ8CEI3 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
Ccdc28aQ8CEI3 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28aQ8CEI3 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28aQ8CEI3 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC18.99■□□□□ 0.63
Ccdc28aQ8CEI3 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28aQ8CEI3 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28aQ8CEI3 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28aQ8CEI3 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ccdc28aQ8CEI3 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ccdc28aQ8CEI3 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ccdc28aQ8CEI3 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Reep4-203ENSMUST00000226563 1444 ntBASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc28aQ8CEI3 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Ccdc28aQ8CEI3 Gm38345-201ENSMUST00000192635 1748 ntBASIC18.95■□□□□ 0.62
Ccdc28aQ8CEI3 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28aQ8CEI3 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28aQ8CEI3 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28aQ8CEI3 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28aQ8CEI3 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc28aQ8CEI3 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms