Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
Usp40Q8BWR4 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Usp40Q8BWR4 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
Usp40Q8BWR4 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC24.79■■□□□ 1.56
Usp40Q8BWR4 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC24.79■■□□□ 1.56
Usp40Q8BWR4 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
Usp40Q8BWR4 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Usp40Q8BWR4 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
Usp40Q8BWR4 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
Usp40Q8BWR4 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
Usp40Q8BWR4 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC24.78■■□□□ 1.56
Usp40Q8BWR4 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Gm12085-201ENSMUST00000119263 940 ntBASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC24.77■■□□□ 1.56
Usp40Q8BWR4 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Gm7889-201ENSMUST00000185591 958 ntBASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Gm38342-201ENSMUST00000195710 2980 ntBASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Tgds-204ENSMUST00000228543 1594 ntBASIC24.76■■□□□ 1.55
Usp40Q8BWR4 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Usp40Q8BWR4 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Usp40Q8BWR4 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Usp40Q8BWR4 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC24.75■■□□□ 1.55
Usp40Q8BWR4 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Usp40Q8BWR4 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Usp40Q8BWR4 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Usp40Q8BWR4 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
Usp40Q8BWR4 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Usp40Q8BWR4 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
Usp40Q8BWR4 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Usp40Q8BWR4 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
Usp40Q8BWR4 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC24.74■■□□□ 1.55
Usp40Q8BWR4 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC24.74■■□□□ 1.55
Usp40Q8BWR4 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Usp40Q8BWR4 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Usp40Q8BWR4 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Usp40Q8BWR4 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
Usp40Q8BWR4 Gm43231-201ENSMUST00000202960 2258 ntBASIC24.74■■□□□ 1.55
Usp40Q8BWR4 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Usp40Q8BWR4 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC24.73■■□□□ 1.55
Usp40Q8BWR4 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Usp40Q8BWR4 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
Usp40Q8BWR4 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Usp40Q8BWR4 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC24.73■■□□□ 1.55
Usp40Q8BWR4 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
Usp40Q8BWR4 Gm37820-201ENSMUST00000194021 2147 ntBASIC24.73■■□□□ 1.55
Usp40Q8BWR4 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC24.72■■□□□ 1.55
Usp40Q8BWR4 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Usp40Q8BWR4 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
Usp40Q8BWR4 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Usp40Q8BWR4 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Usp40Q8BWR4 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Usp40Q8BWR4 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
Usp40Q8BWR4 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Usp40Q8BWR4 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Usp40Q8BWR4 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
Usp40Q8BWR4 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Usp40Q8BWR4 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
Usp40Q8BWR4 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Usp40Q8BWR4 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Usp40Q8BWR4 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Usp40Q8BWR4 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
Usp40Q8BWR4 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms