Protein–RNA interactions for Protein: Q8BGE6

Atg4b, Cysteine protease ATG4B, mousemouse

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4bQ8BGE6 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Atg4bQ8BGE6 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Atg4bQ8BGE6 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Atg4bQ8BGE6 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC16.96■□□□□ 0.3
Atg4bQ8BGE6 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Atg4bQ8BGE6 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Atg4bQ8BGE6 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Atg4bQ8BGE6 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Atg4bQ8BGE6 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Atg4bQ8BGE6 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
Atg4bQ8BGE6 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Atg4bQ8BGE6 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Atg4bQ8BGE6 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Atg4bQ8BGE6 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Atg4bQ8BGE6 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC16.94■□□□□ 0.3
Atg4bQ8BGE6 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Atg4bQ8BGE6 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Atg4bQ8BGE6 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Atg4bQ8BGE6 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Atg4bQ8BGE6 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Atg4bQ8BGE6 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Gm12441-201ENSMUST00000121806 588 ntBASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Flg-201ENSMUST00000050758 1488 ntBASIC16.93■□□□□ 0.3
Atg4bQ8BGE6 Dmtn-207ENSMUST00000228001 2437 ntBASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Gm42939-201ENSMUST00000197514 2205 ntBASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Gm38285-201ENSMUST00000192928 922 ntBASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Gm2559-201ENSMUST00000201323 363 ntBASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Zfp783-201ENSMUST00000095946 670 ntBASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Atg4bQ8BGE6 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Atg4bQ8BGE6 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Atg4bQ8BGE6 Gm15847-201ENSMUST00000121417 1065 ntBASIC16.91■□□□□ 0.3
Atg4bQ8BGE6 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.91■□□□□ 0.3
Atg4bQ8BGE6 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC16.91■□□□□ 0.3
Atg4bQ8BGE6 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC16.91■□□□□ 0.3
Atg4bQ8BGE6 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms