Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Col7a1Q63870 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
Col7a1Q63870 Gm14057-201ENSMUST00000120631 482 ntBASIC15.07■□□□□ 0
Col7a1Q63870 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
Col7a1Q63870 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Col7a1Q63870 Gm32051-202ENSMUST00000197905 2385 ntBASIC15.07■□□□□ 0
Col7a1Q63870 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Col7a1Q63870 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC15.06■□□□□ 0
Col7a1Q63870 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC15.06■□□□□ 0
Col7a1Q63870 Gm10060-201ENSMUST00000212002 111 ntBASIC15.06■□□□□ 0
Col7a1Q63870 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC15.06■□□□□ 0
Col7a1Q63870 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Col7a1Q63870 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC15.06■□□□□ 0
Col7a1Q63870 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC15.06■□□□□ 0
Col7a1Q63870 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC15.06■□□□□ 0
Col7a1Q63870 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Col7a1Q63870 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Col7a1Q63870 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC15.05■□□□□ 0
Col7a1Q63870 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Col7a1Q63870 Gm1401-201ENSMUST00000122048 772 ntBASIC15.05■□□□□ 0
Col7a1Q63870 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC15.05■□□□□ 0
Col7a1Q63870 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC15.05■□□□□ 0
Col7a1Q63870 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
Col7a1Q63870 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Col7a1Q63870 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
Col7a1Q63870 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC15.05■□□□□ -0
Col7a1Q63870 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Col7a1Q63870 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC15.05■□□□□ -0
Col7a1Q63870 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Col7a1Q63870 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC15.05■□□□□ -0
Col7a1Q63870 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC15.05■□□□□ -0
Col7a1Q63870 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC15.05■□□□□ -0
Col7a1Q63870 AC152827.1-201ENSMUST00000221143 2189 ntBASIC15.05■□□□□ -0
Col7a1Q63870 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC15.04■□□□□ -0
Col7a1Q63870 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Col7a1Q63870 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC15.04■□□□□ -0
Col7a1Q63870 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col7a1Q63870 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col7a1Q63870 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC15.04■□□□□ -0
Col7a1Q63870 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col7a1Q63870 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Col7a1Q63870 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Col7a1Q63870 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col7a1Q63870 Gm8000-201ENSMUST00000188378 592 ntBASIC15.04■□□□□ -0
Col7a1Q63870 Gm9694-201ENSMUST00000193347 1189 ntBASIC15.04■□□□□ -0
Col7a1Q63870 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Col7a1Q63870 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Col7a1Q63870 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
Col7a1Q63870 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC15.03■□□□□ -0
Col7a1Q63870 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC15.03■□□□□ -0
Col7a1Q63870 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col7a1Q63870 Gm7213-201ENSMUST00000215977 950 ntBASIC15.03■□□□□ -0
Col7a1Q63870 Gm5364-201ENSMUST00000216789 889 ntBASIC15.03■□□□□ -0
Col7a1Q63870 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC15.03■□□□□ -0
Col7a1Q63870 Rps4l-201ENSMUST00000071745 943 ntBASIC15.03■□□□□ -0
Col7a1Q63870 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC15.03■□□□□ -0
Col7a1Q63870 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
Col7a1Q63870 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col7a1Q63870 Gm5264-201ENSMUST00000190584 848 ntBASIC15.03■□□□□ -0
Col7a1Q63870 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Col7a1Q63870 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Col7a1Q63870 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Col7a1Q63870 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC15.02■□□□□ -0
Col7a1Q63870 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC15.02■□□□□ -0
Col7a1Q63870 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Col7a1Q63870 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC15.02■□□□□ -0
Col7a1Q63870 Gm8097-201ENSMUST00000117903 829 ntBASIC15.02■□□□□ -0
Col7a1Q63870 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC15.02■□□□□ -0
Col7a1Q63870 AC161829.1-201ENSMUST00000220298 281 ntBASIC15.02■□□□□ -0
Col7a1Q63870 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col7a1Q63870 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col7a1Q63870 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Col7a1Q63870 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col7a1Q63870 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col7a1Q63870 Mir770-201ENSMUST00000103252 94 ntBASIC15.02□□□□□ -0.01
Col7a1Q63870 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC15.02□□□□□ -0.01
Col7a1Q63870 Gm12350-201ENSMUST00000121208 462 ntBASIC15.02□□□□□ -0.01
Col7a1Q63870 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC15.02□□□□□ -0.01
Col7a1Q63870 Gm10052-201ENSMUST00000168019 960 ntBASIC15.02□□□□□ -0.01
Col7a1Q63870 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col7a1Q63870 Gm7729-201ENSMUST00000050143 801 ntBASIC15.02□□□□□ -0.01
Col7a1Q63870 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col7a1Q63870 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col7a1Q63870 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col7a1Q63870 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col7a1Q63870 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms