Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col3a1P08121 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col3a1P08121 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col3a1P08121 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Col3a1P08121 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Col3a1P08121 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC21.6■■□□□ 1.05
Col3a1P08121 Gm38342-201ENSMUST00000195710 2980 ntBASIC21.6■■□□□ 1.05
Col3a1P08121 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col3a1P08121 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col3a1P08121 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC21.6■■□□□ 1.05
Col3a1P08121 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col3a1P08121 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Col3a1P08121 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Col3a1P08121 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col3a1P08121 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col3a1P08121 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Col3a1P08121 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Col3a1P08121 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col3a1P08121 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Col3a1P08121 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Col3a1P08121 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Col3a1P08121 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Col3a1P08121 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col3a1P08121 Gm38027-201ENSMUST00000192315 235 ntBASIC21.58■■□□□ 1.05
Col3a1P08121 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC21.58■■□□□ 1.05
Col3a1P08121 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col3a1P08121 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Col3a1P08121 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col3a1P08121 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Col3a1P08121 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col3a1P08121 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC21.58■■□□□ 1.05
Col3a1P08121 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Col3a1P08121 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Col3a1P08121 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Col3a1P08121 Gm4974-201ENSMUST00000209974 875 ntBASIC21.58■■□□□ 1.04
Col3a1P08121 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC21.58■■□□□ 1.04
Col3a1P08121 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col3a1P08121 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC21.57■■□□□ 1.04
Col3a1P08121 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col3a1P08121 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col3a1P08121 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col3a1P08121 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC21.57■■□□□ 1.04
Col3a1P08121 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col3a1P08121 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Col3a1P08121 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col3a1P08121 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col3a1P08121 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC21.56■■□□□ 1.04
Col3a1P08121 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col3a1P08121 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col3a1P08121 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
Col3a1P08121 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
Col3a1P08121 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col3a1P08121 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Col3a1P08121 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col3a1P08121 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Col3a1P08121 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Col3a1P08121 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col3a1P08121 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col3a1P08121 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col3a1P08121 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col3a1P08121 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col3a1P08121 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC21.55■■□□□ 1.04
Col3a1P08121 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Col3a1P08121 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col3a1P08121 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC21.55■■□□□ 1.04
Col3a1P08121 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col3a1P08121 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
Col3a1P08121 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col3a1P08121 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col3a1P08121 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col3a1P08121 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Col3a1P08121 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col3a1P08121 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC21.54■■□□□ 1.04
Col3a1P08121 Gm37820-201ENSMUST00000194021 2147 ntBASIC21.54■■□□□ 1.04
Col3a1P08121 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col3a1P08121 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Col3a1P08121 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC21.54■■□□□ 1.04
Col3a1P08121 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
Col3a1P08121 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Col3a1P08121 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC21.54■■□□□ 1.04
Col3a1P08121 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
Col3a1P08121 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col3a1P08121 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Col3a1P08121 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Col3a1P08121 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col3a1P08121 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col3a1P08121 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC21.53■■□□□ 1.04
Col3a1P08121 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col3a1P08121 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC21.53■■□□□ 1.04
Col3a1P08121 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC21.53■■□□□ 1.04
Col3a1P08121 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col3a1P08121 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col3a1P08121 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col3a1P08121 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Col3a1P08121 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC21.52■■□□□ 1.04
Col3a1P08121 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Col3a1P08121 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Col3a1P08121 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col3a1P08121 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col3a1P08121 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms