Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Chd3B1AR17 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Chd3B1AR17 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Chd3B1AR17 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.65■□□□□ 0.42
Chd3B1AR17 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Chd3B1AR17 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Chd3B1AR17 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.65■□□□□ 0.42
Chd3B1AR17 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.65■□□□□ 0.42
Chd3B1AR17 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.65■□□□□ 0.42
Chd3B1AR17 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Chd3B1AR17 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Chd3B1AR17 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Chd3B1AR17 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Chd3B1AR17 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Chd3B1AR17 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Chd3B1AR17 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Chd3B1AR17 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Chd3B1AR17 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC17.64■□□□□ 0.41
Chd3B1AR17 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Chd3B1AR17 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC17.64■□□□□ 0.41
Chd3B1AR17 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.64■□□□□ 0.41
Chd3B1AR17 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Chd3B1AR17 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC17.64■□□□□ 0.41
Chd3B1AR17 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.64■□□□□ 0.41
Chd3B1AR17 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Chd3B1AR17 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
Chd3B1AR17 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Chd3B1AR17 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Chd3B1AR17 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.64■□□□□ 0.41
Chd3B1AR17 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Chd3B1AR17 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC17.64■□□□□ 0.41
Chd3B1AR17 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Chd3B1AR17 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Chd3B1AR17 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Chd3B1AR17 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Gm10616-201ENSMUST00000205285 2127 ntBASIC17.63■□□□□ 0.41
Chd3B1AR17 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.63■□□□□ 0.41
Chd3B1AR17 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC17.63■□□□□ 0.41
Chd3B1AR17 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
Chd3B1AR17 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.63■□□□□ 0.41
Chd3B1AR17 Timm23-208ENSMUST00000226683 750 ntBASIC17.63■□□□□ 0.41
Chd3B1AR17 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Chd3B1AR17 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Chd3B1AR17 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Chd3B1AR17 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Chd3B1AR17 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Chd3B1AR17 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.62■□□□□ 0.41
Chd3B1AR17 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.62■□□□□ 0.41
Chd3B1AR17 Gm21814-202ENSMUST00000203277 873 ntBASIC17.62■□□□□ 0.41
Chd3B1AR17 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Chd3B1AR17 Gm6627-201ENSMUST00000218299 2386 ntBASIC17.62■□□□□ 0.41
Chd3B1AR17 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Chd3B1AR17 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Chd3B1AR17 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Chd3B1AR17 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Chd3B1AR17 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Chd3B1AR17 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.62■□□□□ 0.41
Chd3B1AR17 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Chd3B1AR17 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Chd3B1AR17 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.61■□□□□ 0.41
Chd3B1AR17 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 AC108858.1-201ENSMUST00000228461 1498 ntBASIC17.61■□□□□ 0.41
Chd3B1AR17 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Chd3B1AR17 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.61■□□□□ 0.41
Chd3B1AR17 Gm7712-202ENSMUST00000222331 1510 ntBASIC17.61■□□□□ 0.41
Chd3B1AR17 Gm5417-201ENSMUST00000079706 384 ntBASIC17.6■□□□□ 0.41
Chd3B1AR17 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC17.6■□□□□ 0.41
Chd3B1AR17 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chd3B1AR17 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Chd3B1AR17 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Chd3B1AR17 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC17.6■□□□□ 0.41
Chd3B1AR17 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms