Protein–RNA interactions for Protein: A0A0B4J1H5

Trbv20, T cell receptor beta, variable 20 (Fragment), mousemouse

Predictions only

Length 111 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv20A0A0B4J1H5 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv20A0A0B4J1H5 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv20A0A0B4J1H5 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trbv20A0A0B4J1H5 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv20A0A0B4J1H5 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trbv20A0A0B4J1H5 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trbv20A0A0B4J1H5 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC16.14■□□□□ 0.18
Trbv20A0A0B4J1H5 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trbv20A0A0B4J1H5 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trbv20A0A0B4J1H5 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trbv20A0A0B4J1H5 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC16.14■□□□□ 0.18
Trbv20A0A0B4J1H5 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Gm27801-201ENSMUST00000184174 223 ntBASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Gm37519-201ENSMUST00000191687 2210 ntBASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trbv20A0A0B4J1H5 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Gm8309-201ENSMUST00000206627 1448 ntBASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Gm5812-201ENSMUST00000061073 957 ntBASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trbv20A0A0B4J1H5 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trbv20A0A0B4J1H5 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Gm15546-201ENSMUST00000122095 826 ntBASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Gm11421-201ENSMUST00000122124 294 ntBASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC16.11■□□□□ 0.17
Trbv20A0A0B4J1H5 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv20A0A0B4J1H5 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Trbv20A0A0B4J1H5 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv20A0A0B4J1H5 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv20A0A0B4J1H5 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv20A0A0B4J1H5 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms