Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm28538-201ENSMUST00000190919 2166 ntTSL 5 BASIC9.33□□□□□ -0.92
Cux1P53564 Gm38209-201ENSMUST00000192711 2169 ntTSL 5 BASIC9.33□□□□□ -0.92
Cux1P53564 Gm37937-201ENSMUST00000194130 2168 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
Cux1P53564 Gm37263-201ENSMUST00000195837 2169 ntTSL 5 BASIC9.33□□□□□ -0.92
Cux1P53564 Gm38325-201ENSMUST00000194507 1377 ntBASIC9.33□□□□□ -0.92
Cux1P53564 Ripk1-203ENSMUST00000167374 6472 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Cux1P53564 Zcchc7-208ENSMUST00000147272 4251 ntTSL 2 BASIC9.32□□□□□ -0.92
Cux1P53564 Gm9268-201ENSMUST00000166914 2586 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
Cux1P53564 Gm15044-201ENSMUST00000120703 598 ntBASIC9.32□□□□□ -0.92
Cux1P53564 Olfr377-ps1-201ENSMUST00000134011 1136 ntAPPRIS P1 TSL 3 BASIC9.32□□□□□ -0.92
Cux1P53564 Gm11197-201ENSMUST00000145158 839 ntBASIC9.32□□□□□ -0.92
Cux1P53564 Ear-ps5-201ENSMUST00000164700 463 ntBASIC9.32□□□□□ -0.92
Cux1P53564 1700003H04Rik-206ENSMUST00000180162 1086 ntAPPRIS P5 TSL 5 BASIC9.32□□□□□ -0.92
Cux1P53564 Gm29529-201ENSMUST00000187154 714 ntTSL 3 BASIC9.32□□□□□ -0.92
Cux1P53564 Gm4265-201ENSMUST00000206701 674 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Cux1P53564 Gm31432-201ENSMUST00000214727 538 ntTSL 5 BASIC9.32□□□□□ -0.92
Cux1P53564 AL603745.1-201ENSMUST00000215473 532 ntBASIC9.32□□□□□ -0.92
Cux1P53564 1700003H04Rik-201ENSMUST00000047110 1040 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
Cux1P53564 Ptprd-201ENSMUST00000050757 4698 ntTSL 5 BASIC9.32□□□□□ -0.92
Cux1P53564 Smarca2-203ENSMUST00000112637 1962 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
Cux1P53564 Gm16270-201ENSMUST00000160327 3238 ntBASIC9.32□□□□□ -0.92
Cux1P53564 Wdr12-201ENSMUST00000027173 10012 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Cux1P53564 Gm12057-201ENSMUST00000117244 1427 ntBASIC9.32□□□□□ -0.92
Cux1P53564 AC155929.3-201ENSMUST00000217963 1428 ntTSL 5 BASIC9.32□□□□□ -0.92
Cux1P53564 Iqch-204ENSMUST00000163982 3375 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
Cux1P53564 Gm9938-201ENSMUST00000067077 1756 ntAPPRIS P1 BASIC9.32□□□□□ -0.92
Cux1P53564 Gm26984-201ENSMUST00000182345 3510 ntBASIC9.32□□□□□ -0.92
Cux1P53564 AC153971.1-201ENSMUST00000215097 3811 ntBASIC9.32□□□□□ -0.92
Cux1P53564 Gm7680-201ENSMUST00000216198 1348 ntBASIC9.32□□□□□ -0.92
Cux1P53564 Snx10-207ENSMUST00000179365 2464 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
Cux1P53564 Gm4787-201ENSMUST00000062182 2474 ntAPPRIS P1 BASIC9.32□□□□□ -0.92
Cux1P53564 Sirpb1a-203ENSMUST00000192700 1499 ntAPPRIS P2 TSL 1 (best) BASIC9.32□□□□□ -0.92
Cux1P53564 Gm42607-201ENSMUST00000200221 3393 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm37082-201ENSMUST00000192629 1927 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm12569-202ENSMUST00000126189 796 ntTSL 5 BASIC9.31□□□□□ -0.92
Cux1P53564 2310081O03Rik-201ENSMUST00000128591 759 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 4931403E22Rik-201ENSMUST00000177048 668 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm21241-201ENSMUST00000179551 934 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Lockd-204ENSMUST00000184991 243 ntTSL 5 BASIC9.31□□□□□ -0.92
Cux1P53564 Gm29582-201ENSMUST00000185667 931 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm28750-201ENSMUST00000186327 658 ntTSL 5 BASIC9.31□□□□□ -0.92
Cux1P53564 Rhoay-ps2-201ENSMUST00000186362 581 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm2325-201ENSMUST00000186637 581 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm6137-201ENSMUST00000187552 578 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm20838-202ENSMUST00000187712 931 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 1700040F15Rik-201ENSMUST00000188244 931 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm21996-201ENSMUST00000188269 931 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm21256-202ENSMUST00000188881 932 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm21739-202ENSMUST00000188917 933 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
Cux1P53564 Gm28891-202ENSMUST00000189333 927 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm21094-202ENSMUST00000189577 926 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm20792-201ENSMUST00000189765 931 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm28919-201ENSMUST00000190026 920 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm28510-201ENSMUST00000190572 928 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm21861-202ENSMUST00000190806 931 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 1700120G07Rik-202ENSMUST00000190881 885 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm28640-201ENSMUST00000190918 550 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm20819-201ENSMUST00000191091 925 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm20871-201ENSMUST00000191322 931 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm21865-202ENSMUST00000191443 923 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm30737-201ENSMUST00000192683 923 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Gm37681-201ENSMUST00000193880 727 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm35134-201ENSMUST00000194086 923 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 4930503L19Rik-203ENSMUST00000212074 1210 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 AC138284.5-201ENSMUST00000214389 652 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm46192-201ENSMUST00000217894 326 ntBASIC9.31□□□□□ -0.92
Cux1P53564 AC136376.1-201ENSMUST00000228496 950 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Olfr1106-201ENSMUST00000099867 939 ntAPPRIS P1 BASIC9.31□□□□□ -0.92
Cux1P53564 Zim1-201ENSMUST00000002336 7693 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Bmpr1b-204ENSMUST00000106232 4164 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Galnt13-201ENSMUST00000068595 1671 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Synpr-202ENSMUST00000112656 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Dab2-201ENSMUST00000078019 3793 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Mbd5-201ENSMUST00000047413 8543 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Olfr802-202ENSMUST00000203785 5535 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
Cux1P53564 Olfr916-203ENSMUST00000214093 3685 ntAPPRIS P1 TSL 3 BASIC9.31□□□□□ -0.92
Cux1P53564 Spata22-201ENSMUST00000117445 3200 ntAPPRIS P1 TSL 2 BASIC9.31□□□□□ -0.92
Cux1P53564 Lifr-207ENSMUST00000227727 2489 ntAPPRIS ALT2 BASIC9.31□□□□□ -0.92
Cux1P53564 Cfap70-201ENSMUST00000022348 3469 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Abcc9-202ENSMUST00000087527 6213 ntAPPRIS P5 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Fkbp15-202ENSMUST00000084528 3329 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Tgif1-210ENSMUST00000172229 1446 ntAPPRIS ALT1 TSL 3 BASIC9.31□□□□□ -0.92
Cux1P53564 Zrsr1-201ENSMUST00000049506 3282 ntAPPRIS P1 BASIC9.31□□□□□ -0.92
Cux1P53564 Gm11734-201ENSMUST00000132261 728 ntTSL 3 BASIC9.31□□□□□ -0.92
Cux1P53564 Tnfsf13os-202ENSMUST00000144033 578 ntTSL 5 BASIC9.31□□□□□ -0.92
Cux1P53564 Vmn1r-ps80-201ENSMUST00000174838 966 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm27985-201ENSMUST00000185112 378 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm29454-201ENSMUST00000190805 393 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm38670-201ENSMUST00000199248 77 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Gm6520-201ENSMUST00000200636 410 ntBASIC9.31□□□□□ -0.92
Cux1P53564 AC164629.3-201ENSMUST00000219325 611 ntTSL 5 BASIC9.31□□□□□ -0.92
Cux1P53564 AC164315.1-201ENSMUST00000226452 708 ntBASIC9.31□□□□□ -0.92
Cux1P53564 Morn2-201ENSMUST00000061703 644 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Mcoln3-201ENSMUST00000039450 2991 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cux1P53564 Unc79-201ENSMUST00000085079 7762 ntAPPRIS ALT2 TSL 2 BASIC9.31□□□□□ -0.92
Cux1P53564 Slc4a10-201ENSMUST00000054484 5320 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cux1P53564 Gm37151-201ENSMUST00000194631 5007 ntBASIC9.3□□□□□ -0.92
Cux1P53564 Gm17473-201ENSMUST00000180585 2216 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Cux1P53564 Akr1c19-202ENSMUST00000118663 5832 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
Cux1P53564 Ift80-201ENSMUST00000029347 3880 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 72.2 ms