Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rtl3Q6P1Y1 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rtl3Q6P1Y1 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rtl3Q6P1Y1 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rtl3Q6P1Y1 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rtl3Q6P1Y1 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rtl3Q6P1Y1 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rtl3Q6P1Y1 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rtl3Q6P1Y1 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Wnt10b-205ENSMUST00000226846 1204 ntBASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rtl3Q6P1Y1 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Dio3-201ENSMUST00000097228 1449 ntBASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Gm15847-201ENSMUST00000121417 1065 ntBASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Rtl3Q6P1Y1 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Rtl3Q6P1Y1 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.65■□□□□ 0.58
Rtl3Q6P1Y1 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rtl3Q6P1Y1 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rtl3Q6P1Y1 Gm13181-201ENSMUST00000120117 1069 ntBASIC18.65■□□□□ 0.58
Rtl3Q6P1Y1 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Rtl3Q6P1Y1 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Rtl3Q6P1Y1 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rtl3Q6P1Y1 Flg-201ENSMUST00000050758 1488 ntBASIC18.65■□□□□ 0.58
Rtl3Q6P1Y1 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rtl3Q6P1Y1 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Rtl3Q6P1Y1 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rtl3Q6P1Y1 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.64■□□□□ 0.57
Rtl3Q6P1Y1 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rtl3Q6P1Y1 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Rtl3Q6P1Y1 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rtl3Q6P1Y1 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Rtl3Q6P1Y1 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Rtl3Q6P1Y1 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Gm11249-201ENSMUST00000117071 859 ntBASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Mir7071-201ENSMUST00000184847 69 ntBASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.63■□□□□ 0.57
Rtl3Q6P1Y1 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rtl3Q6P1Y1 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rtl3Q6P1Y1 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms