Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Ddb1Q3U1J4 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ddb1Q3U1J4 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ddb1Q3U1J4 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ddb1Q3U1J4 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
Ddb1Q3U1J4 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ddb1Q3U1J4 Gm27389-201ENSMUST00000183622 195 ntBASIC23.06■■□□□ 1.28
Ddb1Q3U1J4 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC23.06■■□□□ 1.28
Ddb1Q3U1J4 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
Ddb1Q3U1J4 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC23.06■■□□□ 1.28
Ddb1Q3U1J4 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Ddb1Q3U1J4 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Gm7153-201ENSMUST00000117092 455 ntBASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Gm29518-201ENSMUST00000190858 372 ntBASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
Ddb1Q3U1J4 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Ddb1Q3U1J4 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC23.04■■□□□ 1.28
Ddb1Q3U1J4 Gm9013-201ENSMUST00000132939 882 ntBASIC23.04■■□□□ 1.28
Ddb1Q3U1J4 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Ddb1Q3U1J4 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Ddb1Q3U1J4 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Ddb1Q3U1J4 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Ddb1Q3U1J4 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC23.04■■□□□ 1.28
Ddb1Q3U1J4 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Ddb1Q3U1J4 Golph3-202ENSMUST00000226517 2359 ntBASIC23.04■■□□□ 1.28
Ddb1Q3U1J4 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Ddb1Q3U1J4 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Ddb1Q3U1J4 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Ddb1Q3U1J4 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
Ddb1Q3U1J4 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC23.03■■□□□ 1.28
Ddb1Q3U1J4 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC23.03■■□□□ 1.28
Ddb1Q3U1J4 Umpk-ps-201ENSMUST00000211897 827 ntBASIC23.03■■□□□ 1.28
Ddb1Q3U1J4 Gm18669-201ENSMUST00000216049 778 ntBASIC23.03■■□□□ 1.28
Ddb1Q3U1J4 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
Ddb1Q3U1J4 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Ddb1Q3U1J4 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC23.03■■□□□ 1.28
Ddb1Q3U1J4 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Gm44771-201ENSMUST00000206975 626 ntBASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Ddb1Q3U1J4 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
Ddb1Q3U1J4 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
Ddb1Q3U1J4 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC23■■□□□ 1.27
Ddb1Q3U1J4 AC108858.1-201ENSMUST00000228461 1498 ntBASIC23■■□□□ 1.27
Ddb1Q3U1J4 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
Ddb1Q3U1J4 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
Ddb1Q3U1J4 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Ddb1Q3U1J4 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC23■■□□□ 1.27
Ddb1Q3U1J4 Gm7791-201ENSMUST00000219066 539 ntBASIC23■■□□□ 1.27
Ddb1Q3U1J4 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Ddb1Q3U1J4 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
Ddb1Q3U1J4 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Ddb1Q3U1J4 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC23■■□□□ 1.27
Ddb1Q3U1J4 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Ddb1Q3U1J4 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Ddb1Q3U1J4 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC22.99■■□□□ 1.27
Ddb1Q3U1J4 Gm7638-201ENSMUST00000121348 967 ntBASIC22.99■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms