Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col9a1Q05722 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.76■□□□□ 0.43
Col9a1Q05722 Gm38027-201ENSMUST00000192315 235 ntBASIC17.76■□□□□ 0.43
Col9a1Q05722 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.76■□□□□ 0.43
Col9a1Q05722 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col9a1Q05722 AC161424.1-202ENSMUST00000213570 767 ntTSL 3 BASIC17.76■□□□□ 0.43
Col9a1Q05722 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col9a1Q05722 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col9a1Q05722 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col9a1Q05722 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col9a1Q05722 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col9a1Q05722 Gm11355-201ENSMUST00000121120 306 ntBASIC17.75■□□□□ 0.43
Col9a1Q05722 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Col9a1Q05722 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col9a1Q05722 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col9a1Q05722 Olfr173-201ENSMUST00000049940 1164 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Col9a1Q05722 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col9a1Q05722 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Col9a1Q05722 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
Col9a1Q05722 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col9a1Q05722 Gm13127-201ENSMUST00000118978 1389 ntBASIC17.75■□□□□ 0.43
Col9a1Q05722 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Col9a1Q05722 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Col9a1Q05722 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col9a1Q05722 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC17.75■□□□□ 0.43
Col9a1Q05722 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col9a1Q05722 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col9a1Q05722 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Col9a1Q05722 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col9a1Q05722 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col9a1Q05722 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col9a1Q05722 AC166341.7-201ENSMUST00000221698 126 ntBASIC17.74■□□□□ 0.43
Col9a1Q05722 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col9a1Q05722 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col9a1Q05722 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col9a1Q05722 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC17.74■□□□□ 0.43
Col9a1Q05722 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Col9a1Q05722 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Col9a1Q05722 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
Col9a1Q05722 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Col9a1Q05722 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col9a1Q05722 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col9a1Q05722 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.72■□□□□ 0.43
Col9a1Q05722 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col9a1Q05722 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col9a1Q05722 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col9a1Q05722 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col9a1Q05722 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col9a1Q05722 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC17.72■□□□□ 0.43
Col9a1Q05722 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.72■□□□□ 0.43
Col9a1Q05722 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.72■□□□□ 0.43
Col9a1Q05722 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC17.72■□□□□ 0.43
Col9a1Q05722 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC17.72■□□□□ 0.43
Col9a1Q05722 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col9a1Q05722 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col9a1Q05722 Mir1668-201ENSMUST00000184114 107 ntBASIC17.72■□□□□ 0.43
Col9a1Q05722 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC17.72■□□□□ 0.43
Col9a1Q05722 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col9a1Q05722 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col9a1Q05722 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Col9a1Q05722 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Col9a1Q05722 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Col9a1Q05722 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col9a1Q05722 Gm15920-201ENSMUST00000118998 402 ntBASIC17.71■□□□□ 0.43
Col9a1Q05722 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col9a1Q05722 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col9a1Q05722 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Col9a1Q05722 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC17.71■□□□□ 0.43
Col9a1Q05722 Gm5364-201ENSMUST00000216789 889 ntBASIC17.71■□□□□ 0.43
Col9a1Q05722 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.71■□□□□ 0.43
Col9a1Q05722 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.71■□□□□ 0.43
Col9a1Q05722 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col9a1Q05722 Gm15165-201ENSMUST00000118140 502 ntBASIC17.7■□□□□ 0.42
Col9a1Q05722 Gm11779-201ENSMUST00000118541 368 ntBASIC17.7■□□□□ 0.42
Col9a1Q05722 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col9a1Q05722 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC17.7■□□□□ 0.42
Col9a1Q05722 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Col9a1Q05722 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.7■□□□□ 0.42
Col9a1Q05722 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col9a1Q05722 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col9a1Q05722 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col9a1Q05722 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Col9a1Q05722 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Col9a1Q05722 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC17.69■□□□□ 0.42
Col9a1Q05722 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Col9a1Q05722 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col9a1Q05722 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col9a1Q05722 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC17.69■□□□□ 0.42
Col9a1Q05722 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms