Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Hmgb1P63158 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Hmgb1P63158 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb1P63158 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb1P63158 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Hmgb1P63158 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Hmgb1P63158 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC19.85■□□□□ 0.77
Hmgb1P63158 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Hmgb1P63158 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.85■□□□□ 0.77
Hmgb1P63158 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
Hmgb1P63158 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Hmgb1P63158 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Hmgb1P63158 Gm38345-201ENSMUST00000192635 1748 ntBASIC19.85■□□□□ 0.77
Hmgb1P63158 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb1P63158 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb1P63158 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb1P63158 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb1P63158 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb1P63158 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb1P63158 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb1P63158 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb1P63158 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb1P63158 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC19.84■□□□□ 0.77
Hmgb1P63158 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Hmgb1P63158 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.83■□□□□ 0.77
Hmgb1P63158 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb1P63158 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb1P63158 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
Hmgb1P63158 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb1P63158 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb1P63158 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb1P63158 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb1P63158 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb1P63158 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb1P63158 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Hmgb1P63158 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.83■□□□□ 0.77
Hmgb1P63158 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Hmgb1P63158 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
Hmgb1P63158 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Hmgb1P63158 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC19.83■□□□□ 0.76
Hmgb1P63158 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Hmgb1P63158 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Hmgb1P63158 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Hmgb1P63158 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb1P63158 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb1P63158 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb1P63158 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb1P63158 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.82■□□□□ 0.76
Hmgb1P63158 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.82■□□□□ 0.76
Hmgb1P63158 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Hmgb1P63158 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC19.82■□□□□ 0.76
Hmgb1P63158 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.82■□□□□ 0.76
Hmgb1P63158 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Hmgb1P63158 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb1P63158 Gm5874-201ENSMUST00000096101 508 ntBASIC19.82■□□□□ 0.76
Hmgb1P63158 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb1P63158 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb1P63158 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb1P63158 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
Hmgb1P63158 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.82■□□□□ 0.76
Hmgb1P63158 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb1P63158 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb1P63158 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb1P63158 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb1P63158 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb1P63158 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Hmgb1P63158 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC19.81■□□□□ 0.76
Hmgb1P63158 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb1P63158 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb1P63158 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb1P63158 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb1P63158 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb1P63158 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb1P63158 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Hmgb1P63158 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.81■□□□□ 0.76
Hmgb1P63158 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb1P63158 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb1P63158 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb1P63158 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb1P63158 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb1P63158 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb1P63158 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb1P63158 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.8■□□□□ 0.76
Hmgb1P63158 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb1P63158 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb1P63158 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb1P63158 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms