Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Lire1P11260 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lire1P11260 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lire1P11260 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Lire1P11260 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.02■□□□□ 0.32
Lire1P11260 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Lire1P11260 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC17.02■□□□□ 0.32
Lire1P11260 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.02■□□□□ 0.32
Lire1P11260 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.02■□□□□ 0.32
Lire1P11260 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Lire1P11260 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Lire1P11260 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
Lire1P11260 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
Lire1P11260 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Lire1P11260 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lire1P11260 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lire1P11260 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Lire1P11260 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lire1P11260 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Lire1P11260 Nespas-201ENSMUST00000143738 1083 ntBASIC17.01■□□□□ 0.31
Lire1P11260 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Lire1P11260 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Lire1P11260 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC17.01■□□□□ 0.31
Lire1P11260 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lire1P11260 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC17.01■□□□□ 0.31
Lire1P11260 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lire1P11260 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lire1P11260 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
Lire1P11260 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Lire1P11260 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lire1P11260 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Lire1P11260 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lire1P11260 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lire1P11260 Gm6627-201ENSMUST00000218299 2386 ntBASIC17■□□□□ 0.31
Lire1P11260 Gm7290-201ENSMUST00000104990 617 ntBASIC17■□□□□ 0.31
Lire1P11260 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lire1P11260 Gm12918-201ENSMUST00000120234 636 ntBASIC17■□□□□ 0.31
Lire1P11260 Gm15710-201ENSMUST00000121821 636 ntBASIC17■□□□□ 0.31
Lire1P11260 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC17■□□□□ 0.31
Lire1P11260 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17■□□□□ 0.31
Lire1P11260 Gm5075-201ENSMUST00000196916 622 ntBASIC17■□□□□ 0.31
Lire1P11260 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17■□□□□ 0.31
Lire1P11260 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lire1P11260 Gm4968-201ENSMUST00000071458 858 ntBASIC17■□□□□ 0.31
Lire1P11260 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lire1P11260 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17■□□□□ 0.31
Lire1P11260 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17■□□□□ 0.31
Lire1P11260 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lire1P11260 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17■□□□□ 0.31
Lire1P11260 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lire1P11260 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17■□□□□ 0.31
Lire1P11260 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Lire1P11260 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Lire1P11260 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
Lire1P11260 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Lire1P11260 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Gm20760-201ENSMUST00000179197 648 ntBASIC16.99■□□□□ 0.31
Lire1P11260 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Gm5898-201ENSMUST00000121016 2071 ntBASIC16.99■□□□□ 0.31
Lire1P11260 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Gm42911-201ENSMUST00000199360 1630 ntBASIC16.99■□□□□ 0.31
Lire1P11260 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Lire1P11260 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Lire1P11260 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lire1P11260 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lire1P11260 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lire1P11260 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lire1P11260 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lire1P11260 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lire1P11260 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lire1P11260 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Lire1P11260 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lire1P11260 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lire1P11260 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lire1P11260 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.98■□□□□ 0.31
Lire1P11260 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Lire1P11260 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Lire1P11260 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lire1P11260 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lire1P11260 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lire1P11260 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lire1P11260 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC16.97■□□□□ 0.31
Lire1P11260 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lire1P11260 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC16.97■□□□□ 0.31
Lire1P11260 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lire1P11260 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Lire1P11260 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lire1P11260 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Lire1P11260 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Lire1P11260 AC154266.1-201ENSMUST00000223190 503 ntBASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 58.1 ms