Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col3a1P08121 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC21.7■■□□□ 1.06
Col3a1P08121 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC21.7■■□□□ 1.06
Col3a1P08121 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col3a1P08121 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC21.69■■□□□ 1.06
Col3a1P08121 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col3a1P08121 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col3a1P08121 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col3a1P08121 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col3a1P08121 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC21.69■■□□□ 1.06
Col3a1P08121 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC21.69■■□□□ 1.06
Col3a1P08121 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col3a1P08121 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col3a1P08121 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col3a1P08121 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Col3a1P08121 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col3a1P08121 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Col3a1P08121 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col3a1P08121 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
Col3a1P08121 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Col3a1P08121 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col3a1P08121 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col3a1P08121 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Col3a1P08121 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col3a1P08121 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Col3a1P08121 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC21.67■■□□□ 1.06
Col3a1P08121 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col3a1P08121 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col3a1P08121 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col3a1P08121 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.67■■□□□ 1.06
Col3a1P08121 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col3a1P08121 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col3a1P08121 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Col3a1P08121 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col3a1P08121 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col3a1P08121 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC21.66■■□□□ 1.06
Col3a1P08121 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col3a1P08121 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC21.66■■□□□ 1.06
Col3a1P08121 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Col3a1P08121 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col3a1P08121 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Col3a1P08121 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col3a1P08121 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col3a1P08121 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Col3a1P08121 Gm7889-201ENSMUST00000185591 958 ntBASIC21.65■■□□□ 1.06
Col3a1P08121 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col3a1P08121 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col3a1P08121 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Col3a1P08121 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Col3a1P08121 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col3a1P08121 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.65■■□□□ 1.06
Col3a1P08121 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col3a1P08121 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Col3a1P08121 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC21.64■■□□□ 1.06
Col3a1P08121 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col3a1P08121 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col3a1P08121 Gm6627-201ENSMUST00000218299 2386 ntBASIC21.64■■□□□ 1.06
Col3a1P08121 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col3a1P08121 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col3a1P08121 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col3a1P08121 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Col3a1P08121 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col3a1P08121 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Col3a1P08121 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col3a1P08121 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Col3a1P08121 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col3a1P08121 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC21.64■■□□□ 1.05
Col3a1P08121 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Col3a1P08121 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC21.64■■□□□ 1.05
Col3a1P08121 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col3a1P08121 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Col3a1P08121 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col3a1P08121 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC21.63■■□□□ 1.05
Col3a1P08121 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col3a1P08121 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col3a1P08121 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col3a1P08121 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col3a1P08121 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col3a1P08121 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col3a1P08121 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col3a1P08121 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col3a1P08121 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col3a1P08121 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Col3a1P08121 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Col3a1P08121 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col3a1P08121 Gm10418-201ENSMUST00000100943 576 ntBASIC21.62■■□□□ 1.05
Col3a1P08121 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Col3a1P08121 Gm10517-202ENSMUST00000192970 758 ntBASIC21.62■■□□□ 1.05
Col3a1P08121 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col3a1P08121 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col3a1P08121 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Col3a1P08121 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col3a1P08121 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC21.61■■□□□ 1.05
Col3a1P08121 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC21.61■■□□□ 1.05
Col3a1P08121 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col3a1P08121 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC21.61■■□□□ 1.05
Col3a1P08121 Gm13401-201ENSMUST00000117074 291 ntBASIC21.61■■□□□ 1.05
Col3a1P08121 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC21.61■■□□□ 1.05
Col3a1P08121 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC21.61■■□□□ 1.05
Col3a1P08121 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms