Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Scaper-204ENSMUST00000216595 2911 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Kcnj16-205ENSMUST00000178798 3678 ntAPPRIS P1 TSL 3 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Inpp5f-208ENSMUST00000151237 2609 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gria4-204ENSMUST00000212533 5207 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Sptlc3-202ENSMUST00000110083 2227 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Spata22-201ENSMUST00000117445 3200 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm156-202ENSMUST00000118532 2000 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm45520-201ENSMUST00000210109 2031 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Oxr1-201ENSMUST00000022918 4232 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Xpo4-201ENSMUST00000089482 3456 ntAPPRIS ALT1 TSL 5 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Mat2a-201ENSMUST00000059472 2804 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Cst8-202ENSMUST00000109947 804 ntAPPRIS P1 TSL 3 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm11504-201ENSMUST00000120211 173 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm14900-201ENSMUST00000120304 733 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm8722-201ENSMUST00000121466 769 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm23426-201ENSMUST00000122483 318 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Tmem216-203ENSMUST00000123788 935 ntAPPRIS P1 TSL 3 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Selenok-ps1-201ENSMUST00000125204 785 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Nudt12os-202ENSMUST00000152750 849 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Mir1953-201ENSMUST00000157866 89 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm25550-201ENSMUST00000158079 128 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm16102-201ENSMUST00000160955 420 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm17201-201ENSMUST00000167226 390 ntTSL 5 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm18808-201ENSMUST00000173316 462 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm20617-202ENSMUST00000177332 758 ntTSL 3 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm26595-201ENSMUST00000181585 484 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Mhrt-202ENSMUST00000185798 447 ntTSL 3 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm8506-201ENSMUST00000186661 829 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 4833421G17Rik-201ENSMUST00000191704 844 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm37491-201ENSMUST00000192552 1111 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Cfhr2-202ENSMUST00000194186 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 AC117240.1-201ENSMUST00000199436 61 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm43772-201ENSMUST00000202052 379 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 1700051K13Rik-201ENSMUST00000204426 696 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm7769-201ENSMUST00000212900 933 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 AC159297.1-201ENSMUST00000218689 290 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 CT009754.4-201ENSMUST00000221430 565 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm18620-201ENSMUST00000222295 324 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm36607-201ENSMUST00000222750 1087 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Cypt1-201ENSMUST00000024026 672 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Olfr350-201ENSMUST00000055130 939 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Rpl23a-ps1-201ENSMUST00000085632 465 ntBASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Gm94-201ENSMUST00000096570 748 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Olfr652-201ENSMUST00000098175 1061 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Prl2c3-201ENSMUST00000099805 857 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Olfr1301-202ENSMUST00000207590 4820 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Tex11-201ENSMUST00000009814 3250 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Shoc2-202ENSMUST00000169861 4065 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Hdac9-201ENSMUST00000110819 4413 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Olfr770-203ENSMUST00000204250 1644 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Olfr994-202ENSMUST00000214679 1648 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Olfr508-201ENSMUST00000072914 1635 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Vmn1r203-203ENSMUST00000228889 8213 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Trp53inp1-201ENSMUST00000029865 5404 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Cr2-208ENSMUST00000195120 6212 ntTSL 5 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Myo3b-201ENSMUST00000060208 6256 ntAPPRIS P2 TSL 5 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Csn2-206ENSMUST00000197422 1329 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Vmn1r6-202ENSMUST00000226689 8453 ntAPPRIS P2 BASIC5.98□□□□□ -1.45
Trim3Q9R1R2 Ifi207-201ENSMUST00000042610 3422 ntAPPRIS P2 TSL 5 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Papola-215ENSMUST00000170002 2605 ntTSL 5 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm17435-201ENSMUST00000181452 2994 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm37076-201ENSMUST00000192033 2294 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm4924-203ENSMUST00000210381 3330 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Olfr693-202ENSMUST00000215541 4015 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Vmn1r34-203ENSMUST00000226910 2982 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm43612-201ENSMUST00000196087 3207 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 AU023762-203ENSMUST00000209897 2179 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Tgif1-211ENSMUST00000186358 1455 ntTSL 3 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm38414-201ENSMUST00000209819 1488 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Shprh-201ENSMUST00000044053 9271 ntAPPRIS P4 TSL 1 (best) BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Rbmy-201ENSMUST00000100360 1708 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm10256-202ENSMUST00000188114 1708 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm21708-203ENSMUST00000190283 1708 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm21123-201ENSMUST00000210822 1734 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm38124-201ENSMUST00000191710 2581 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Olfr1381-202ENSMUST00000213256 4954 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Dgkk-201ENSMUST00000067410 7155 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Igkv4-50-201ENSMUST00000103363 352 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Igkv18-36-201ENSMUST00000103373 344 ntAPPRIS ALT2 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Crisp4-202ENSMUST00000115340 1179 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm13176-201ENSMUST00000117910 477 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm15164-201ENSMUST00000122203 271 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm11545-201ENSMUST00000146507 375 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Sox5os2-201ENSMUST00000156443 627 ntTSL 3 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm6133-201ENSMUST00000164064 948 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Igkv4-53-201ENSMUST00000166380 292 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm25244-201ENSMUST00000178089 132 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm26509-201ENSMUST00000180947 948 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Olr1-203ENSMUST00000182784 570 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm27209-201ENSMUST00000183834 898 ntTSL 3 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm18447-201ENSMUST00000187501 307 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm28501-201ENSMUST00000188729 421 ntTSL 2 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm20926-201ENSMUST00000194457 696 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 AC099760.1-201ENSMUST00000196300 153 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm45054-201ENSMUST00000206525 342 ntTSL 2 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm45196-201ENSMUST00000206751 825 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm44787-202ENSMUST00000208339 1069 ntTSL 5 BASIC5.97□□□□□ -1.45
Trim3Q9R1R2 AC132384.8-201ENSMUST00000218152 1204 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 Gm8290-201ENSMUST00000218202 477 ntBASIC5.97□□□□□ -1.45
Trim3Q9R1R2 AC174082.2-201ENSMUST00000222094 543 ntBASIC5.97□□□□□ -1.45
Retrieved 100 of 76,532 protein–RNA pairs in 68.6 ms