Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 1700011H14Rik-205ENSMUST00000228936 3444 ntAPPRIS P2 BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Atf2-205ENSMUST00000112010 4037 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Bbx-203ENSMUST00000089404 4024 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Atf2-202ENSMUST00000090802 4016 ntTSL 5 BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Usp29-201ENSMUST00000054055 2610 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 9830144P21Rik-202ENSMUST00000127525 3362 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Clca3b-201ENSMUST00000159989 3361 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Gm6811-201ENSMUST00000169389 1533 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 AC107232.1-201ENSMUST00000227785 1503 ntBASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Foxp2-201ENSMUST00000031545 5647 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Olfr1353-201ENSMUST00000039718 1992 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Olfr1348-209ENSMUST00000213549 2714 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Poln-201ENSMUST00000042954 2897 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Nsun4-206ENSMUST00000165493 3920 ntTSL 2 BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Gcnt2-203ENSMUST00000110191 4352 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
Trim3Q9R1R2 Vmn1r219-202ENSMUST00000226845 5979 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Vmn1r219-205ENSMUST00000228666 5993 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Wdr66-206ENSMUST00000163092 4009 ntTSL 5 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Rfx4-203ENSMUST00000095388 3274 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Tbc1d23-203ENSMUST00000226586 3112 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm43176-201ENSMUST00000199653 2989 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm44255-201ENSMUST00000203456 2053 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm9575-201ENSMUST00000122140 1339 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 AC121094.1-201ENSMUST00000224766 1345 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Chek1-201ENSMUST00000034625 3397 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Olfr527-202ENSMUST00000214143 3094 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Npy2r-202ENSMUST00000098997 3325 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Macf1-202ENSMUST00000084301 23398 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Emcn-202ENSMUST00000122064 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Vmn2r-ps44-201ENSMUST00000174053 2412 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Igkv6-20-201ENSMUST00000103388 375 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm22267-201ENSMUST00000104008 131 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Tfpi-207ENSMUST00000111722 1232 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm3476-201ENSMUST00000112742 853 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm12653-201ENSMUST00000117778 561 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm14295-201ENSMUST00000118012 1213 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm14614-201ENSMUST00000119873 384 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm7494-201ENSMUST00000121248 441 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm16152-201ENSMUST00000131663 872 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm26486-201ENSMUST00000158021 110 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Scgb2b19-201ENSMUST00000179688 520 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 4933416M07Rik-201ENSMUST00000181424 624 ntTSL 5 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm17847-201ENSMUST00000188261 1127 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 AC122844.1-201ENSMUST00000195971 107 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm43091-201ENSMUST00000198157 423 ntTSL 3 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm7663-201ENSMUST00000201151 1240 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm45514-201ENSMUST00000211531 689 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 AC115793.1-201ENSMUST00000216605 215 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 AC132239.1-201ENSMUST00000223157 773 ntTSL 5 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 AC154573.2-201ENSMUST00000224174 378 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 AC159267.1-201ENSMUST00000226702 678 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 AC123533.2-201ENSMUST00000228176 375 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Cst12-201ENSMUST00000028932 644 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Pifo-202ENSMUST00000066319 899 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Olfr933-201ENSMUST00000075680 1003 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 BC147527-201ENSMUST00000081558 504 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Abca14-201ENSMUST00000084640 5384 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Cd274-201ENSMUST00000016640 3622 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Sntg1-204ENSMUST00000132064 4165 ntTSL 5 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Fcrl5-202ENSMUST00000166297 1527 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Psd3-214ENSMUST00000212960 4562 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 BC080695-202ENSMUST00000105774 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm15789-201ENSMUST00000118992 1359 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Agl-201ENSMUST00000040603 9625 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Bclaf1-202ENSMUST00000092678 5307 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm37435-201ENSMUST00000192078 3947 ntBASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Gm9968-201ENSMUST00000147504 2990 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Vmn1r34-207ENSMUST00000228647 2979 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
Trim3Q9R1R2 Asxl3-201ENSMUST00000097655 11697 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.44
Trim3Q9R1R2 Kcnc2-202ENSMUST00000218445 4033 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
Trim3Q9R1R2 Dclre1c-204ENSMUST00000115066 3828 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Gm38105-201ENSMUST00000192112 2621 ntBASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Zfp106-211ENSMUST00000171215 6391 ntTSL 5 BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Nedd4-207ENSMUST00000184333 4034 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Gm44215-201ENSMUST00000204910 2711 ntBASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Tmem156-204ENSMUST00000212080 1411 ntAPPRIS P5 TSL 5 BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Bnc2-201ENSMUST00000102820 4133 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Zfp935-204ENSMUST00000223247 1949 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Serpinb6b-202ENSMUST00000110293 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Mef2c-203ENSMUST00000185052 3556 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Gm26340-201ENSMUST00000102365 99 ntBASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Igkv4-90-201ENSMUST00000103334 352 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Ighv1-18-201ENSMUST00000103504 306 ntAPPRIS ALT2 BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Tcrg-V6-201ENSMUST00000103555 403 ntAPPRIS ALT2 BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Gm12886-201ENSMUST00000106266 1149 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Gm13566-201ENSMUST00000117428 1142 ntBASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Prelid3b-202ENSMUST00000117442 683 ntTSL 3 BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Gm12713-201ENSMUST00000118404 764 ntBASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Gm11445-201ENSMUST00000119101 532 ntBASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Pcnp-204ENSMUST00000122253 792 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Gm16249-201ENSMUST00000124055 1258 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Dnah2os-201ENSMUST00000124108 859 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Speer3-201ENSMUST00000124677 1192 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Gm12279-201ENSMUST00000142533 294 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Gm4997-201ENSMUST00000154056 360 ntBASIC6.02□□□□□ -1.45
Trim3Q9R1R2 4430402I18Rik-206ENSMUST00000164777 1066 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 1110032A03Rik-209ENSMUST00000177546 647 ntTSL 3 BASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Gm9274-201ENSMUST00000182505 984 ntBASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Mir6348-201ENSMUST00000183804 120 ntBASIC6.02□□□□□ -1.45
Trim3Q9R1R2 Trav1-202ENSMUST00000185651 329 ntAPPRIS ALT2 BASIC6.02□□□□□ -1.45
Retrieved 100 of 76,532 protein–RNA pairs in 56.8 ms