Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Ap3s1-ps2-201ENSMUST00000178107 579 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Gm20823-201ENSMUST00000179949 1231 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm20865-202ENSMUST00000181163 1225 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm9274-201ENSMUST00000182505 984 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Gm9658-201ENSMUST00000182757 1012 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Gm27348-201ENSMUST00000184511 170 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Gm21868-201ENSMUST00000185623 1230 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm29049-201ENSMUST00000185705 1224 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm20924-202ENSMUST00000186910 1230 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm20816-202ENSMUST00000187846 1225 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm20809-202ENSMUST00000187943 1224 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm21728-201ENSMUST00000188442 695 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Gm21889-201ENSMUST00000188487 695 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Gm28286-201ENSMUST00000188704 586 ntTSL 2 BASIC7.53□□□□□ -1.2
Traf1P39428 Gm28918-201ENSMUST00000188822 699 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Halr1-203ENSMUST00000189071 511 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm20932-201ENSMUST00000189115 694 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Gm21721-202ENSMUST00000189253 1225 ntAPPRIS P1 TSL 3 BASIC7.53□□□□□ -1.2
Traf1P39428 Gm21920-201ENSMUST00000190042 695 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Gm28171-201ENSMUST00000190100 1226 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm20803-202ENSMUST00000190968 1230 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm20867-202ENSMUST00000190987 1224 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm37502-201ENSMUST00000192981 356 ntTSL 2 BASIC7.53□□□□□ -1.2
Traf1P39428 4930597L12Rik-201ENSMUST00000196286 911 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Igkv4-83-201ENSMUST00000196933 334 ntBASIC7.53□□□□□ -1.2
Traf1P39428 1700015C17Rik-201ENSMUST00000197297 239 ntTSL 5 BASIC7.53□□□□□ -1.2
Traf1P39428 Gm31305-202ENSMUST00000200435 761 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm43748-201ENSMUST00000202329 1233 ntBASIC7.53□□□□□ -1.2
Traf1P39428 4930480K02Rik-201ENSMUST00000203679 1054 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Gm44213-201ENSMUST00000204977 703 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Gm20163-201ENSMUST00000212232 494 ntTSL 3 BASIC7.53□□□□□ -1.2
Traf1P39428 Gm7780-201ENSMUST00000214787 406 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Gm9535-201ENSMUST00000218499 768 ntBASIC7.53□□□□□ -1.2
Traf1P39428 AC134917.2-201ENSMUST00000223354 124 ntBASIC7.53□□□□□ -1.2
Traf1P39428 AC154642.1-201ENSMUST00000224173 740 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Klrb1a-201ENSMUST00000032512 1274 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm24695-201ENSMUST00000083877 83 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Obox4-ps28-201ENSMUST00000175654 1362 ntBASIC7.53□□□□□ -1.2
Traf1P39428 Tra2b-201ENSMUST00000023564 1369 ntTSL 3 BASIC7.53□□□□□ -1.2
Traf1P39428 Gm28472-202ENSMUST00000190133 1499 ntTSL 5 BASIC7.53□□□□□ -1.2
Traf1P39428 Gm28789-202ENSMUST00000190429 1499 ntTSL 5 BASIC7.53□□□□□ -1.2
Traf1P39428 Olfr338-201ENSMUST00000072114 5780 ntAPPRIS P1 TSL 3 BASIC7.53□□□□□ -1.2
Traf1P39428 Hrasls-201ENSMUST00000089824 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Nedd9-201ENSMUST00000021794 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Gm4922-202ENSMUST00000216654 2357 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Mfap3-201ENSMUST00000020830 4839 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Traf1P39428 Catsperg1-201ENSMUST00000047846 3566 ntTSL 5 BASIC7.53□□□□□ -1.2
Traf1P39428 Gm13872-202ENSMUST00000143995 1408 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
Traf1P39428 Gm14245-201ENSMUST00000118939 1843 ntBASIC7.52□□□□□ -1.2
Traf1P39428 Rs1-201ENSMUST00000033650 5840 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Mdm4-ps-201ENSMUST00000121299 6514 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Fut9-201ENSMUST00000084770 12134 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Ptprz1-206ENSMUST00000202579 6871 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Trbv13-3-201ENSMUST00000103271 340 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
Traf1P39428 Gm24173-201ENSMUST00000104130 128 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Atp6ap1l-201ENSMUST00000109541 1186 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Gm14485-201ENSMUST00000119489 493 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Nlk-ps1-201ENSMUST00000120843 1230 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Gm14507-201ENSMUST00000156169 347 ntTSL 2 BASIC7.52□□□□□ -1.21
Traf1P39428 Gm25487-201ENSMUST00000158725 125 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Serpina3e-ps-201ENSMUST00000165968 1228 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Lrrc4-202ENSMUST00000171353 883 ntTSL 3 BASIC7.52□□□□□ -1.21
Traf1P39428 Obox1-202ENSMUST00000172463 783 ntAPPRIS P1 TSL 3 BASIC7.52□□□□□ -1.21
Traf1P39428 Kcnj13-202ENSMUST00000174179 261 ntTSL 5 BASIC7.52□□□□□ -1.21
Traf1P39428 Gm26820-201ENSMUST00000180764 1008 ntTSL 5 BASIC7.52□□□□□ -1.21
Traf1P39428 2610027F03Rik-201ENSMUST00000185443 530 ntTSL 5 BASIC7.52□□□□□ -1.21
Traf1P39428 Gm28586-201ENSMUST00000189857 456 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Gm34816-201ENSMUST00000193363 502 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Gm37974-201ENSMUST00000193668 220 ntTSL 3 BASIC7.52□□□□□ -1.21
Traf1P39428 Ighv8-2-201ENSMUST00000195037 359 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
Traf1P39428 9430087J23Rik-201ENSMUST00000195414 1152 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Gm44265-201ENSMUST00000203631 465 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Gm45259-201ENSMUST00000209217 1006 ntBASIC7.52□□□□□ -1.21
Traf1P39428 AC153566.2-201ENSMUST00000213841 330 ntTSL 5 BASIC7.52□□□□□ -1.21
Traf1P39428 CT025579.4-201ENSMUST00000224598 627 ntBASIC7.52□□□□□ -1.21
Traf1P39428 AC165106.1-201ENSMUST00000227580 408 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Skint10-202ENSMUST00000068851 493 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Olfr1076-201ENSMUST00000076263 942 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
Traf1P39428 Gm10540-201ENSMUST00000097581 276 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Olfr1254-201ENSMUST00000099764 945 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
Traf1P39428 Olfr1226-205ENSMUST00000216445 7046 ntAPPRIS P1 TSL 5 BASIC7.52□□□□□ -1.21
Traf1P39428 Hsf2-201ENSMUST00000079833 2604 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Gtpbp4-204ENSMUST00000222098 8783 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Phospho2-206ENSMUST00000180290 3267 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Vmn1r30-202ENSMUST00000226334 1946 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
Traf1P39428 4933404K08Rik-201ENSMUST00000156977 1434 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Gm7073-203ENSMUST00000190178 1419 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Gm43557-201ENSMUST00000197100 2370 ntBASIC7.52□□□□□ -1.21
Traf1P39428 Clrn3-201ENSMUST00000053716 3305 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Pou1f1-204ENSMUST00000176330 1310 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
Traf1P39428 Gm39321-201ENSMUST00000216597 2075 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
Traf1P39428 Olfr1417-203ENSMUST00000214887 3582 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
Traf1P39428 CT009765.1-201ENSMUST00000219088 2705 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
Traf1P39428 Speer5-ps1-203ENSMUST00000217649 7431 ntTSL 5 BASIC7.51□□□□□ -1.21
Traf1P39428 Fancd2-208ENSMUST00000204827 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
Traf1P39428 Tgif1-211ENSMUST00000186358 1455 ntTSL 3 BASIC7.51□□□□□ -1.21
Traf1P39428 Pcdh15-237ENSMUST00000193361 7881 ntAPPRIS P3 TSL 5 BASIC7.51□□□□□ -1.21
Traf1P39428 Gm37086-201ENSMUST00000193082 3452 ntBASIC7.51□□□□□ -1.21
Traf1P39428 Gm23311-201ENSMUST00000104152 134 ntBASIC7.51□□□□□ -1.21
Traf1P39428 Gm12169-201ENSMUST00000109228 1065 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
Retrieved 100 of 76,532 protein–RNA pairs in 85.8 ms