Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ttc38-203ENSMUST00000146088 3749 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Hoxd3P09027 Gm43839-201ENSMUST00000196183 2325 ntBASIC6.33□□□□□ -1.4
Hoxd3P09027 Gm36099-201ENSMUST00000221946 1798 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
Hoxd3P09027 Pax9-201ENSMUST00000001538 4166 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Hoxd3P09027 Ptprr-201ENSMUST00000063470 3619 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
Hoxd3P09027 Gm336-201ENSMUST00000186376 1480 ntBASIC6.33□□□□□ -1.4
Hoxd3P09027 Gm4894-202ENSMUST00000216428 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Hoxd3P09027 Gm45629-201ENSMUST00000209629 2546 ntBASIC6.33□□□□□ -1.4
Hoxd3P09027 Gm18878-201ENSMUST00000223071 1443 ntBASIC6.33□□□□□ -1.4
Hoxd3P09027 Lipf-201ENSMUST00000025680 1411 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Hoxd3P09027 Dnajc8-202ENSMUST00000094657 1401 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Hoxd3P09027 Krr1-203ENSMUST00000163048 5023 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
Hoxd3P09027 Vmn1r30-202ENSMUST00000226334 1946 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
Hoxd3P09027 Kantr-207ENSMUST00000195280 4212 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
Hoxd3P09027 Gria3-209ENSMUST00000165288 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Olfr1215-202ENSMUST00000214809 2683 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Atg4a-ps-201ENSMUST00000117271 2115 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm6819-201ENSMUST00000185325 1891 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 AW822252-205ENSMUST00000192662 1352 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Pax3-202ENSMUST00000087086 3863 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Myo1f-201ENSMUST00000087605 3819 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Flrt3-201ENSMUST00000056760 3334 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Zim1-202ENSMUST00000122432 3060 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 BC080695-202ENSMUST00000105774 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Svil-210ENSMUST00000140448 7423 ntAPPRIS P3 TSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm3460-201ENSMUST00000167882 1809 ntAPPRIS P5 TSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm17359-203ENSMUST00000199658 1819 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Rpgr-206ENSMUST00000115534 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm38155-201ENSMUST00000192285 2763 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Scn2b-201ENSMUST00000093855 3958 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Trappc12-202ENSMUST00000168129 3230 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Cpeb4-202ENSMUST00000109412 6303 ntAPPRIS ALT1 TSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 C9-201ENSMUST00000022749 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Sec16b-203ENSMUST00000111700 4369 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Myrfl-201ENSMUST00000048229 3164 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm28485-201ENSMUST00000185300 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm28684-201ENSMUST00000185586 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm28422-201ENSMUST00000186112 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm29447-201ENSMUST00000186407 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm29628-201ENSMUST00000187206 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm28316-201ENSMUST00000187576 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm29313-201ENSMUST00000187866 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm28252-201ENSMUST00000188457 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm28950-203ENSMUST00000188826 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm29303-201ENSMUST00000189215 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm28220-201ENSMUST00000189607 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm29342-202ENSMUST00000189689 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm29116-202ENSMUST00000189963 1500 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm29081-203ENSMUST00000190140 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm28726-201ENSMUST00000190994 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm29386-203ENSMUST00000191185 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm33954-202ENSMUST00000195188 1500 ntTSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm43872-201ENSMUST00000203218 2213 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Tdpoz1-201ENSMUST00000094413 2237 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Slc2a9-203ENSMUST00000067886 3602 ntAPPRIS P4 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Rps19-ps2-201ENSMUST00000100614 438 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 0610037L13Rik-204ENSMUST00000106727 926 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Rgs8-204ENSMUST00000111814 678 ntTSL 3 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm14032-201ENSMUST00000117686 1026 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm14352-201ENSMUST00000119250 449 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm12727-201ENSMUST00000119885 359 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm12515-201ENSMUST00000120116 361 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm14156-201ENSMUST00000121538 483 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Olfr343-ps1-201ENSMUST00000121883 303 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm14728-201ENSMUST00000122196 492 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm25806-201ENSMUST00000122782 122 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Rps19-ps1-201ENSMUST00000168472 438 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm9597-201ENSMUST00000171913 602 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Apol11a-201ENSMUST00000172191 1132 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm7031-201ENSMUST00000173709 919 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Pid1-206ENSMUST00000176822 1119 ntTSL 2 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm16596-201ENSMUST00000180576 604 ntTSL 3 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Rps19-ps5-201ENSMUST00000180745 403 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Rps19-ps6-201ENSMUST00000181233 438 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm9149-201ENSMUST00000182724 1007 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 1700030O20Rik-201ENSMUST00000185546 594 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 1700007K09Rik-202ENSMUST00000188899 680 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm29160-201ENSMUST00000190094 699 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm17981-201ENSMUST00000191109 739 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm37193-201ENSMUST00000193087 513 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm37185-201ENSMUST00000193852 410 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Trbv8-201ENSMUST00000194020 285 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Nras-ps2-201ENSMUST00000195269 178 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm6057-201ENSMUST00000195927 314 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm17979-201ENSMUST00000196646 611 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm42472-201ENSMUST00000201626 859 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm18973-201ENSMUST00000205814 511 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm30196-201ENSMUST00000208957 160 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 AC123069.1-201ENSMUST00000215094 824 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 AC164881.1-201ENSMUST00000215648 664 ntTSL 3 BASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm4120-201ENSMUST00000220456 578 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 AC116589.7-201ENSMUST00000221061 239 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 AC164117.1-201ENSMUST00000221726 239 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Gm34047-201ENSMUST00000223547 606 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 AC154747.4-201ENSMUST00000224802 903 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 AC124715.2-201ENSMUST00000226762 617 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 AC144628.2-201ENSMUST00000227374 352 ntBASIC6.32□□□□□ -1.4
Hoxd3P09027 Spats1-201ENSMUST00000024731 1160 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Slc36a3-202ENSMUST00000069816 893 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Hoxd3P09027 Ear2-201ENSMUST00000074839 719 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Retrieved 100 of 76,532 protein–RNA pairs in 195 ms