Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Gm13168-201ENSMUST00000121771 632 ntBASIC16.83■□□□□ 0.28
Cdc40Q9DC48 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Gm26971-201ENSMUST00000182423 1072 ntBASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cdc40Q9DC48 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Gm13509-201ENSMUST00000119733 1308 ntBASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Gm15853-202ENSMUST00000195518 2041 ntBASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cdc40Q9DC48 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Trmt13-210ENSMUST00000198454 880 ntBASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Rab3c-203ENSMUST00000224180 967 ntBASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cdc40Q9DC48 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Cdc40Q9DC48 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Gm37856-201ENSMUST00000191634 999 ntBASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Gm26524-201ENSMUST00000192339 390 ntBASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdc40Q9DC48 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Cdc40Q9DC48 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
Cdc40Q9DC48 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms