Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx28Q9CWT6 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx28Q9CWT6 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx28Q9CWT6 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx28Q9CWT6 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ddx28Q9CWT6 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Ddx28Q9CWT6 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Gm27032-201ENSMUST00000183124 1116 ntBASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
Ddx28Q9CWT6 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Gm38205-201ENSMUST00000192243 258 ntBASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ddx28Q9CWT6 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 AC121598.2-201ENSMUST00000228376 2325 ntBASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ddx28Q9CWT6 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ddx28Q9CWT6 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ddx28Q9CWT6 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ddx28Q9CWT6 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Rncr4-201ENSMUST00000194541 2234 ntBASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx28Q9CWT6 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx28Q9CWT6 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Ddx28Q9CWT6 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC16.87■□□□□ 0.29
Ddx28Q9CWT6 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC16.87■□□□□ 0.29
Ddx28Q9CWT6 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms