Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim60Q8VI40 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim60Q8VI40 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.78■□□□□ 0.6
Trim60Q8VI40 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim60Q8VI40 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim60Q8VI40 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim60Q8VI40 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim60Q8VI40 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim60Q8VI40 Tgds-204ENSMUST00000228543 1594 ntBASIC18.77■□□□□ 0.6
Trim60Q8VI40 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim60Q8VI40 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim60Q8VI40 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim60Q8VI40 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim60Q8VI40 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim60Q8VI40 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Trim60Q8VI40 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Trim60Q8VI40 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Trim60Q8VI40 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Gm13234-201ENSMUST00000120010 747 ntBASIC18.76■□□□□ 0.59
Trim60Q8VI40 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trim60Q8VI40 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Trim60Q8VI40 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim60Q8VI40 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim60Q8VI40 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Trim60Q8VI40 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim60Q8VI40 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim60Q8VI40 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trim60Q8VI40 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim60Q8VI40 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim60Q8VI40 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim60Q8VI40 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim60Q8VI40 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim60Q8VI40 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim60Q8VI40 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim60Q8VI40 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trim60Q8VI40 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Gm2011-201ENSMUST00000203124 1263 ntBASIC18.73■□□□□ 0.59
Trim60Q8VI40 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Fst-202ENSMUST00000223640 2612 ntBASIC18.73■□□□□ 0.59
Trim60Q8VI40 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim60Q8VI40 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.73■□□□□ 0.59
Trim60Q8VI40 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.72■□□□□ 0.59
Trim60Q8VI40 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim60Q8VI40 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim60Q8VI40 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim60Q8VI40 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim60Q8VI40 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim60Q8VI40 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trim60Q8VI40 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms