Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Npc1l1Q6T3U4 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Npc1l1Q6T3U4 CT010444.2-201ENSMUST00000217877 1629 ntBASIC21.8■■□□□ 1.08
Npc1l1Q6T3U4 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Npc1l1Q6T3U4 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Npc1l1Q6T3U4 Alkbh1-212ENSMUST00000185301 408 ntBASIC21.8■■□□□ 1.08
Npc1l1Q6T3U4 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC21.8■■□□□ 1.08
Npc1l1Q6T3U4 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Gm38345-201ENSMUST00000192635 1748 ntBASIC21.79■■□□□ 1.08
Npc1l1Q6T3U4 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Npc1l1Q6T3U4 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Npc1l1Q6T3U4 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Npc1l1Q6T3U4 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC21.78■■□□□ 1.08
Npc1l1Q6T3U4 Gm38285-201ENSMUST00000192928 922 ntBASIC21.78■■□□□ 1.08
Npc1l1Q6T3U4 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Npc1l1Q6T3U4 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Npc1l1Q6T3U4 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Npc1l1Q6T3U4 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Npc1l1Q6T3U4 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Npc1l1Q6T3U4 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.07
Npc1l1Q6T3U4 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
Npc1l1Q6T3U4 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
Npc1l1Q6T3U4 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Npc1l1Q6T3U4 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Npc1l1Q6T3U4 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Npc1l1Q6T3U4 Gm44544-201ENSMUST00000207052 1844 ntBASIC21.75■■□□□ 1.07
Npc1l1Q6T3U4 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Npc1l1Q6T3U4 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC21.75■■□□□ 1.07
Npc1l1Q6T3U4 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC21.75■■□□□ 1.07
Npc1l1Q6T3U4 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Npc1l1Q6T3U4 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Npc1l1Q6T3U4 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Npc1l1Q6T3U4 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Npc1l1Q6T3U4 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Npc1l1Q6T3U4 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Npc1l1Q6T3U4 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Npc1l1Q6T3U4 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Npc1l1Q6T3U4 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms