Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Smarca1Q6PGB8 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarca1Q6PGB8 Fst-202ENSMUST00000223640 2612 ntBASIC20.17■□□□□ 0.82
Smarca1Q6PGB8 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarca1Q6PGB8 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Smarca1Q6PGB8 Gm5828-201ENSMUST00000071842 1860 ntBASIC20.17■□□□□ 0.82
Smarca1Q6PGB8 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarca1Q6PGB8 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarca1Q6PGB8 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Smarca1Q6PGB8 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarca1Q6PGB8 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarca1Q6PGB8 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Smarca1Q6PGB8 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Gm43672-201ENSMUST00000199072 1731 ntBASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Gm45606-201ENSMUST00000209836 2795 ntBASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 AC107452.1-201ENSMUST00000227963 481 ntBASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Smarca1Q6PGB8 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarca1Q6PGB8 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarca1Q6PGB8 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Smarca1Q6PGB8 Gm9194-201ENSMUST00000220749 1447 ntBASIC20.15■□□□□ 0.82
Smarca1Q6PGB8 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarca1Q6PGB8 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarca1Q6PGB8 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Smarca1Q6PGB8 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
Smarca1Q6PGB8 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smarca1Q6PGB8 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smarca1Q6PGB8 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Smarca1Q6PGB8 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC20.14■□□□□ 0.81
Smarca1Q6PGB8 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Smarca1Q6PGB8 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC20.14■□□□□ 0.81
Smarca1Q6PGB8 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smarca1Q6PGB8 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Smarca1Q6PGB8 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Smarca1Q6PGB8 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Smarca1Q6PGB8 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Smarca1Q6PGB8 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smarca1Q6PGB8 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smarca1Q6PGB8 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC20.13■□□□□ 0.81
Smarca1Q6PGB8 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Smarca1Q6PGB8 Gm8520-201ENSMUST00000186517 868 ntBASIC20.13■□□□□ 0.81
Smarca1Q6PGB8 Gm37856-201ENSMUST00000191634 999 ntBASIC20.13■□□□□ 0.81
Smarca1Q6PGB8 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smarca1Q6PGB8 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smarca1Q6PGB8 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Smarca1Q6PGB8 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.13■□□□□ 0.81
Smarca1Q6PGB8 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Smarca1Q6PGB8 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Smarca1Q6PGB8 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Gm44549-201ENSMUST00000208351 577 ntBASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.11■□□□□ 0.81
Smarca1Q6PGB8 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms