Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Gm7290-201ENSMUST00000104990 617 ntBASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Gm12918-201ENSMUST00000120234 636 ntBASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Gm15710-201ENSMUST00000121821 636 ntBASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Gm5075-201ENSMUST00000196916 622 ntBASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.32■□□□□ 0.84
Usp49Q6P9L4 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp49Q6P9L4 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.31■□□□□ 0.84
Usp49Q6P9L4 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Usp49Q6P9L4 Gm45606-201ENSMUST00000209836 2795 ntBASIC20.3■□□□□ 0.84
Usp49Q6P9L4 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp49Q6P9L4 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
Usp49Q6P9L4 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
Usp49Q6P9L4 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC20.3■□□□□ 0.84
Usp49Q6P9L4 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp49Q6P9L4 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp49Q6P9L4 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp49Q6P9L4 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp49Q6P9L4 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Usp49Q6P9L4 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp49Q6P9L4 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Usp49Q6P9L4 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Usp49Q6P9L4 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC20.29■□□□□ 0.84
Usp49Q6P9L4 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC20.29■□□□□ 0.84
Usp49Q6P9L4 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp49Q6P9L4 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.29■□□□□ 0.84
Usp49Q6P9L4 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp49Q6P9L4 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp49Q6P9L4 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC20.28■□□□□ 0.84
Usp49Q6P9L4 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Usp49Q6P9L4 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC20.28■□□□□ 0.84
Usp49Q6P9L4 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Usp49Q6P9L4 AC140264.2-202ENSMUST00000218746 817 ntBASIC20.28■□□□□ 0.84
Usp49Q6P9L4 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC20.28■□□□□ 0.84
Usp49Q6P9L4 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.28■□□□□ 0.84
Usp49Q6P9L4 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Usp49Q6P9L4 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp49Q6P9L4 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Gm37374-201ENSMUST00000194954 1829 ntBASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.27■□□□□ 0.84
Usp49Q6P9L4 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC20.26■□□□□ 0.83
Usp49Q6P9L4 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp49Q6P9L4 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.26■□□□□ 0.83
Usp49Q6P9L4 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Usp49Q6P9L4 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp49Q6P9L4 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.26■□□□□ 0.83
Usp49Q6P9L4 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Usp49Q6P9L4 AC112142.1-201ENSMUST00000228796 918 ntBASIC20.26■□□□□ 0.83
Usp49Q6P9L4 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp49Q6P9L4 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp49Q6P9L4 Gm37811-201ENSMUST00000192416 2601 ntBASIC20.26■□□□□ 0.83
Usp49Q6P9L4 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp49Q6P9L4 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Usp49Q6P9L4 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Usp49Q6P9L4 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp49Q6P9L4 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Usp49Q6P9L4 Mir5133-201ENSMUST00000174955 77 ntBASIC20.25■□□□□ 0.83
Usp49Q6P9L4 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Usp49Q6P9L4 Gm26524-201ENSMUST00000192339 390 ntBASIC20.25■□□□□ 0.83
Usp49Q6P9L4 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp49Q6P9L4 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp49Q6P9L4 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms