Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Hmgb4Q6P8W9 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Hmgb4Q6P8W9 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Hmgb4Q6P8W9 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 AC140264.2-202ENSMUST00000218746 817 ntBASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 AC158538.1-201ENSMUST00000225870 294 ntBASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Hmgb4Q6P8W9 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Hmgb4Q6P8W9 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Gm10698-201ENSMUST00000182663 604 ntBASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 AL672049.1-201ENSMUST00000197943 91 ntBASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Grk6-206ENSMUST00000224995 2971 ntBASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Hmgb4Q6P8W9 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Hmgb4Q6P8W9 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Hmgb4Q6P8W9 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb4Q6P8W9 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb4Q6P8W9 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.89■□□□□ 0.61
Hmgb4Q6P8W9 AC154649.1-201ENSMUST00000227392 384 ntBASIC18.89■□□□□ 0.61
Hmgb4Q6P8W9 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb4Q6P8W9 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb4Q6P8W9 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb4Q6P8W9 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb4Q6P8W9 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb4Q6P8W9 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Hmgb4Q6P8W9 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Hmgb4Q6P8W9 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Hmgb4Q6P8W9 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms