Protein–RNA interactions for Protein: Q6IRU2

Tpm4, Tropomyosin alpha-4 chain, mousemouse

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm4Q6IRU2 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Tpm4Q6IRU2 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.29■□□□□ 0.84
Tpm4Q6IRU2 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Tpm4Q6IRU2 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Tpm4Q6IRU2 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Tpm4Q6IRU2 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Tpm4Q6IRU2 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Tpm4Q6IRU2 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Tpm4Q6IRU2 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.28■□□□□ 0.84
Tpm4Q6IRU2 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Tpm4Q6IRU2 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Tpm4Q6IRU2 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Tpm4Q6IRU2 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Tpm4Q6IRU2 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Tpm4Q6IRU2 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Tpm4Q6IRU2 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Tpm4Q6IRU2 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Tpm4Q6IRU2 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Tpm4Q6IRU2 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.27■□□□□ 0.83
Tpm4Q6IRU2 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Tpm4Q6IRU2 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Tpm4Q6IRU2 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
Tpm4Q6IRU2 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Gm43548-201ENSMUST00000197139 2353 ntBASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
Tpm4Q6IRU2 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Tpm4Q6IRU2 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Fst-202ENSMUST00000223640 2612 ntBASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Tpm4Q6IRU2 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Gm19094-201ENSMUST00000209791 1246 ntBASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Tpm4Q6IRU2 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms