Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lig3P97386 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Lig3P97386 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.67■□□□□ 0.74
Lig3P97386 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lig3P97386 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC19.67■□□□□ 0.74
Lig3P97386 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lig3P97386 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lig3P97386 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Lig3P97386 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Lig3P97386 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lig3P97386 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lig3P97386 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lig3P97386 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Lig3P97386 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lig3P97386 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lig3P97386 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lig3P97386 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Lig3P97386 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Lig3P97386 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lig3P97386 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Lig3P97386 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lig3P97386 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lig3P97386 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Lig3P97386 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lig3P97386 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 AA386476-201ENSMUST00000098781 1665 ntBASIC19.65■□□□□ 0.74
Lig3P97386 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC19.65■□□□□ 0.74
Lig3P97386 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Lig3P97386 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC19.65■□□□□ 0.74
Lig3P97386 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Gm2559-201ENSMUST00000201323 363 ntBASIC19.65■□□□□ 0.74
Lig3P97386 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.65■□□□□ 0.74
Lig3P97386 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lig3P97386 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Lig3P97386 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Lig3P97386 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.64■□□□□ 0.73
Lig3P97386 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Lig3P97386 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC19.64■□□□□ 0.73
Lig3P97386 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Lig3P97386 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lig3P97386 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lig3P97386 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lig3P97386 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Lig3P97386 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lig3P97386 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lig3P97386 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Lig3P97386 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lig3P97386 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lig3P97386 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Lig3P97386 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig3P97386 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Lig3P97386 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.63■□□□□ 0.73
Lig3P97386 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC19.63■□□□□ 0.73
Lig3P97386 AC131586.2-201ENSMUST00000228370 1512 ntBASIC19.63■□□□□ 0.73
Lig3P97386 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.63■□□□□ 0.73
Lig3P97386 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Lig3P97386 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Lig3P97386 Gm37055-201ENSMUST00000191866 133 ntBASIC19.63■□□□□ 0.73
Lig3P97386 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig3P97386 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Lig3P97386 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Lig3P97386 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig3P97386 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lig3P97386 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Lig3P97386 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.62■□□□□ 0.73
Lig3P97386 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Lig3P97386 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC19.62■□□□□ 0.73
Lig3P97386 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lig3P97386 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lig3P97386 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lig3P97386 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lig3P97386 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lig3P97386 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Lig3P97386 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms