Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shmt1P50431 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shmt1P50431 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Shmt1P50431 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC19.19■□□□□ 0.66
Shmt1P50431 Gm38285-201ENSMUST00000192928 922 ntBASIC19.19■□□□□ 0.66
Shmt1P50431 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.19■□□□□ 0.66
Shmt1P50431 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Shmt1P50431 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Shmt1P50431 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Shmt1P50431 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Shmt1P50431 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shmt1P50431 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shmt1P50431 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Shmt1P50431 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shmt1P50431 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shmt1P50431 Gm10812-201ENSMUST00000099864 546 ntBASIC19.18■□□□□ 0.66
Shmt1P50431 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shmt1P50431 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shmt1P50431 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shmt1P50431 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shmt1P50431 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Shmt1P50431 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shmt1P50431 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Shmt1P50431 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shmt1P50431 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC19.17■□□□□ 0.66
Shmt1P50431 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.17■□□□□ 0.66
Shmt1P50431 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shmt1P50431 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Shmt1P50431 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shmt1P50431 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19.16■□□□□ 0.66
Shmt1P50431 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shmt1P50431 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shmt1P50431 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC19.16■□□□□ 0.66
Shmt1P50431 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.16■□□□□ 0.66
Shmt1P50431 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shmt1P50431 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shmt1P50431 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shmt1P50431 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shmt1P50431 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shmt1P50431 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Shmt1P50431 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Shmt1P50431 Fst-202ENSMUST00000223640 2612 ntBASIC19.16■□□□□ 0.66
Shmt1P50431 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Shmt1P50431 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.15■□□□□ 0.66
Shmt1P50431 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.15■□□□□ 0.66
Shmt1P50431 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Shmt1P50431 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Shmt1P50431 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Shmt1P50431 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Shmt1P50431 Gm13158-201ENSMUST00000122007 736 ntBASIC19.14■□□□□ 0.65
Shmt1P50431 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.14■□□□□ 0.65
Shmt1P50431 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.14■□□□□ 0.65
Shmt1P50431 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.14■□□□□ 0.65
Shmt1P50431 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Shmt1P50431 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.13■□□□□ 0.65
Shmt1P50431 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Shmt1P50431 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
Shmt1P50431 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.13■□□□□ 0.65
Shmt1P50431 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Shmt1P50431 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
Shmt1P50431 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Shmt1P50431 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Shmt1P50431 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Shmt1P50431 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Shmt1P50431 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms