Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RaraP11416 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
RaraP11416 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
RaraP11416 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
RaraP11416 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
RaraP11416 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RaraP11416 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
RaraP11416 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.59■□□□□ 0.73
RaraP11416 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RaraP11416 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC19.59■□□□□ 0.73
RaraP11416 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
RaraP11416 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
RaraP11416 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
RaraP11416 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
RaraP11416 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
RaraP11416 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
RaraP11416 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RaraP11416 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RaraP11416 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
RaraP11416 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
RaraP11416 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
RaraP11416 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
RaraP11416 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC19.58■□□□□ 0.72
RaraP11416 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.72
RaraP11416 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
RaraP11416 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
RaraP11416 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RaraP11416 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
RaraP11416 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RaraP11416 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RaraP11416 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.57■□□□□ 0.72
RaraP11416 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RaraP11416 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RaraP11416 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
RaraP11416 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
RaraP11416 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
RaraP11416 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RaraP11416 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RaraP11416 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RaraP11416 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RaraP11416 Gm37374-201ENSMUST00000194954 1829 ntBASIC19.56■□□□□ 0.72
RaraP11416 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RaraP11416 Gm22325-201ENSMUST00000158904 308 ntBASIC19.56■□□□□ 0.72
RaraP11416 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RaraP11416 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RaraP11416 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RaraP11416 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
RaraP11416 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
RaraP11416 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
RaraP11416 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RaraP11416 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC19.55■□□□□ 0.72
RaraP11416 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RaraP11416 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.55■□□□□ 0.72
RaraP11416 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RaraP11416 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RaraP11416 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC19.55■□□□□ 0.72
RaraP11416 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RaraP11416 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
RaraP11416 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
RaraP11416 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Gm10033-202ENSMUST00000211874 928 ntBASIC19.54■□□□□ 0.72
RaraP11416 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
RaraP11416 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
RaraP11416 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
RaraP11416 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC19.53■□□□□ 0.72
RaraP11416 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.53■□□□□ 0.72
RaraP11416 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
RaraP11416 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC19.53■□□□□ 0.72
RaraP11416 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
RaraP11416 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
RaraP11416 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.53■□□□□ 0.72
RaraP11416 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RaraP11416 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.53■□□□□ 0.72
RaraP11416 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.53■□□□□ 0.72
RaraP11416 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
RaraP11416 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RaraP11416 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.52■□□□□ 0.72
RaraP11416 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RaraP11416 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms