Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a4A2AX52 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a4A2AX52 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
Col6a4A2AX52 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC15.25■□□□□ 0.03
Col6a4A2AX52 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a4A2AX52 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col6a4A2AX52 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col6a4A2AX52 Gm8309-201ENSMUST00000206627 1448 ntBASIC15.24■□□□□ 0.03
Col6a4A2AX52 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC15.23■□□□□ 0.03
Col6a4A2AX52 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC15.23■□□□□ 0.03
Col6a4A2AX52 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col6a4A2AX52 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col6a4A2AX52 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Col6a4A2AX52 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a4A2AX52 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a4A2AX52 Gm9103-201ENSMUST00000119371 405 ntBASIC15.21■□□□□ 0.03
Col6a4A2AX52 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a4A2AX52 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a4A2AX52 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a4A2AX52 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col6a4A2AX52 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Col6a4A2AX52 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col6a4A2AX52 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Col6a4A2AX52 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
Col6a4A2AX52 Gm33142-201ENSMUST00000193913 867 ntBASIC15.21■□□□□ 0.02
Col6a4A2AX52 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
Col6a4A2AX52 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col6a4A2AX52 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col6a4A2AX52 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col6a4A2AX52 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col6a4A2AX52 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
Col6a4A2AX52 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Gm5540-201ENSMUST00000131852 1848 ntBASIC15.2■□□□□ 0.02
Col6a4A2AX52 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a4A2AX52 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Gm7284-201ENSMUST00000131667 944 ntBASIC15.2■□□□□ 0.02
Col6a4A2AX52 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col6a4A2AX52 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col6a4A2AX52 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms