Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Clasp1-204ENSMUST00000178710 7566 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm36930-201ENSMUST00000195431 2376 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Tek-202ENSMUST00000073939 4549 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Mir680-1-201ENSMUST00000102257 109 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm24173-201ENSMUST00000104130 128 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Ccdc47-202ENSMUST00000106865 704 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm8534-201ENSMUST00000118553 766 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Mup9-202ENSMUST00000118759 909 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm5319-201ENSMUST00000118965 873 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Mup9-204ENSMUST00000122381 864 ntAPPRIS P2 TSL 2 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm24435-201ENSMUST00000157886 110 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm15680-201ENSMUST00000161597 465 ntTSL 5 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Ipcef1-209ENSMUST00000170680 1174 ntTSL 5 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm22701-201ENSMUST00000175371 291 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 2610027F03Rik-201ENSMUST00000185443 530 ntTSL 5 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Snurf-201ENSMUST00000194059 216 ntAPPRIS P1 TSL 2 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm5853-201ENSMUST00000197183 632 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 1700013A02Rik-201ENSMUST00000202969 645 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm18805-201ENSMUST00000206872 655 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm45486-201ENSMUST00000211767 1109 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm38574-201ENSMUST00000211855 640 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 CAAA01216754.4-203ENSMUST00000217178 1097 ntTSL 5 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 AC147782.1-201ENSMUST00000219169 475 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm5080-201ENSMUST00000220341 743 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 AC154245.1-201ENSMUST00000224615 601 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Mup20-201ENSMUST00000074018 928 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Mup18-201ENSMUST00000098040 930 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Mup11-202ENSMUST00000098046 930 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Mup10-201ENSMUST00000098047 927 ntAPPRIS P1 TSL 2 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Nyap2-205ENSMUST00000137862 3393 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Macrod2os2-201ENSMUST00000143227 3566 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Gm37530-201ENSMUST00000191759 4932 ntBASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Fchsd2-201ENSMUST00000032931 4453 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Slc17a4-201ENSMUST00000021769 1604 ntAPPRIS P2 TSL 5 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Alb-201ENSMUST00000031314 2034 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Cfap57-201ENSMUST00000071972 4020 ntAPPRIS P1 TSL 5 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 6430584L05Rik-201ENSMUST00000204412 3151 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Slc15a2-208ENSMUST00000165531 2158 ntAPPRIS ALT2 TSL 5 BASIC9.12□□□□□ -0.95
Usp40Q8BWR4 Ddx19b-201ENSMUST00000040241 6612 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Mapk10-205ENSMUST00000128869 2518 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Lmbrd1-201ENSMUST00000095062 5228 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Iqch-201ENSMUST00000042322 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Krcc1-202ENSMUST00000168700 1749 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm38178-201ENSMUST00000194502 2471 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm37364-201ENSMUST00000192533 3920 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Snora35-201ENSMUST00000104579 128 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Hspb11-202ENSMUST00000106749 607 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm24590-201ENSMUST00000116699 119 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Scgb2b23-ps-201ENSMUST00000122094 330 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm4660-201ENSMUST00000131499 403 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 AI847159-203ENSMUST00000141786 915 ntTSL 2 BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 AI662270-203ENSMUST00000145461 592 ntTSL 5 BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Snrpe-204ENSMUST00000166915 503 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm6004-201ENSMUST00000173237 1116 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm20738-201ENSMUST00000177666 1225 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm20823-201ENSMUST00000179949 1231 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm20865-202ENSMUST00000181163 1225 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm29049-201ENSMUST00000185705 1224 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm20816-202ENSMUST00000187846 1225 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm20809-202ENSMUST00000187943 1224 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm21728-201ENSMUST00000188442 695 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm21889-201ENSMUST00000188487 695 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm20932-201ENSMUST00000189115 694 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm21721-202ENSMUST00000189253 1225 ntAPPRIS P1 TSL 3 BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm21920-201ENSMUST00000190042 695 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm28171-201ENSMUST00000190100 1226 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm20867-202ENSMUST00000190987 1224 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm37866-201ENSMUST00000191950 696 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm31925-201ENSMUST00000193561 600 ntTSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm6525-201ENSMUST00000193882 1029 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gpr19-210ENSMUST00000203762 498 ntTSL 3 BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Olfr153-201ENSMUST00000217113 1258 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 RMST_1.1-204ENSMUST00000217871 699 ntTSL 5 BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 AC121986.1-201ENSMUST00000218588 781 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 AC173482.2-201ENSMUST00000224044 750 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 BC147527-201ENSMUST00000081558 504 ntAPPRIS P1 BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm22005-201ENSMUST00000082795 141 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm37255-201ENSMUST00000193302 3060 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm13416-201ENSMUST00000117264 1612 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm20541-201ENSMUST00000173035 1406 ntBASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Mylk3-203ENSMUST00000122452 3036 ntAPPRIS ALT2 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Mcm10-201ENSMUST00000027980 3494 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 D630045J12Rik-201ENSMUST00000117556 10916 ntAPPRIS ALT2 TSL 5 BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Mum1l1-201ENSMUST00000113041 4343 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.95
Usp40Q8BWR4 Gm17751-201ENSMUST00000189132 2004 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Lars-201ENSMUST00000097590 3856 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Mbd5-201ENSMUST00000047413 8543 ntAPPRIS P3 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Nat8f2-201ENSMUST00000045008 3301 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usp40Q8BWR4 AC115760.1-201ENSMUST00000225160 1327 ntBASIC9.1□□□□□ -0.95
Usp40Q8BWR4 4921539H07Rik-201ENSMUST00000197200 2985 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Gm43176-201ENSMUST00000199653 2989 ntBASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Clasp1-203ENSMUST00000165223 7207 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Sirpb1b-201ENSMUST00000091319 1499 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Uba1y-202ENSMUST00000190013 3441 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Il1f9-201ENSMUST00000057567 1648 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Gm23311-201ENSMUST00000104152 134 ntBASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Gm21103-201ENSMUST00000112737 984 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Gm7058-201ENSMUST00000119209 902 ntBASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Gm12833-201ENSMUST00000136112 477 ntBASIC9.1□□□□□ -0.95
Usp40Q8BWR4 Lrrc75aos1-201ENSMUST00000142492 779 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms