Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Trim54Q9ERP3 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Hsf1-204ENSMUST00000226872 2104 ntBASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
Trim54Q9ERP3 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Gm7977-201ENSMUST00000193787 748 ntBASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim54Q9ERP3 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trim54Q9ERP3 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.74
Trim54Q9ERP3 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim54Q9ERP3 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
Trim54Q9ERP3 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim54Q9ERP3 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.64■□□□□ 0.73
Trim54Q9ERP3 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim54Q9ERP3 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim54Q9ERP3 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim54Q9ERP3 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trim54Q9ERP3 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Trim54Q9ERP3 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Gm43183-201ENSMUST00000200632 547 ntBASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Gm10138-203ENSMUST00000206952 366 ntBASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trim54Q9ERP3 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Mir5122-201ENSMUST00000175004 89 ntBASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Gm29994-201ENSMUST00000195495 1193 ntBASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Trim54Q9ERP3 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Gm38285-201ENSMUST00000192928 922 ntBASIC19.61■□□□□ 0.73
Trim54Q9ERP3 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Gm43545-201ENSMUST00000196765 2779 ntBASIC19.61■□□□□ 0.73
Trim54Q9ERP3 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.6■□□□□ 0.73
Trim54Q9ERP3 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim54Q9ERP3 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim54Q9ERP3 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trim54Q9ERP3 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms