Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smc1aQ9CU62 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smc1aQ9CU62 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smc1aQ9CU62 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
Smc1aQ9CU62 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Gm6211-202ENSMUST00000167849 925 ntBASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smc1aQ9CU62 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Smc1aQ9CU62 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smc1aQ9CU62 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Smc1aQ9CU62 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.22■□□□□ 0.83
Smc1aQ9CU62 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms