Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gm5867-201ENSMUST00000063197 592 ntBASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Gm43006-201ENSMUST00000197702 1602 ntBASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Gm4974-201ENSMUST00000209974 875 ntBASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col27a1Q5QNQ9 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC17.74■□□□□ 0.43
Col27a1Q5QNQ9 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col27a1Q5QNQ9 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Col27a1Q5QNQ9 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
Col27a1Q5QNQ9 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col27a1Q5QNQ9 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col27a1Q5QNQ9 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col27a1Q5QNQ9 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col27a1Q5QNQ9 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col27a1Q5QNQ9 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col27a1Q5QNQ9 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col27a1Q5QNQ9 AW822252-206ENSMUST00000208904 237 ntBASIC17.73■□□□□ 0.43
Col27a1Q5QNQ9 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col27a1Q5QNQ9 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col27a1Q5QNQ9 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Col27a1Q5QNQ9 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Gm24589-201ENSMUST00000116692 94 ntBASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Gm13474-201ENSMUST00000122466 815 ntBASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Gm11950-201ENSMUST00000121615 838 ntBASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Gm34391-201ENSMUST00000203706 907 ntBASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col27a1Q5QNQ9 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col27a1Q5QNQ9 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col27a1Q5QNQ9 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col27a1Q5QNQ9 Gm27389-201ENSMUST00000183622 195 ntBASIC17.71■□□□□ 0.43
Col27a1Q5QNQ9 Otx2os1-206ENSMUST00000228153 787 ntBASIC17.71■□□□□ 0.43
Col27a1Q5QNQ9 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col27a1Q5QNQ9 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col27a1Q5QNQ9 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col27a1Q5QNQ9 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col27a1Q5QNQ9 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col27a1Q5QNQ9 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Col27a1Q5QNQ9 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Gm7791-201ENSMUST00000219066 539 ntBASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Gm21559-201ENSMUST00000220638 855 ntBASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Gm8587-201ENSMUST00000076538 843 ntBASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col27a1Q5QNQ9 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Gm18115-201ENSMUST00000221209 621 ntBASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Spsb2-203ENSMUST00000112473 1322 ntBASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Col27a1Q5QNQ9 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.68■□□□□ 0.42
Col27a1Q5QNQ9 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms