Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Sfmbt2-201ENSMUST00000041105 7874 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
Usp40Q8BWR4 Gm43681-201ENSMUST00000201581 1903 ntBASIC9.3□□□□□ -0.92
Usp40Q8BWR4 Gm6786-201ENSMUST00000203165 1915 ntBASIC9.3□□□□□ -0.92
Usp40Q8BWR4 Zfp111-203ENSMUST00000086006 6402 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
Usp40Q8BWR4 Fmo9-202ENSMUST00000148677 2462 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Usp40Q8BWR4 Gadl1-201ENSMUST00000069651 3652 ntAPPRIS P2 TSL 5 BASIC9.3□□□□□ -0.92
Usp40Q8BWR4 Gm43880-201ENSMUST00000203635 2162 ntBASIC9.3□□□□□ -0.92
Usp40Q8BWR4 Ccdc7a-201ENSMUST00000095158 1547 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
Usp40Q8BWR4 Grem2-201ENSMUST00000055294 3745 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Usp40Q8BWR4 AC151904.4-201ENSMUST00000219868 1319 ntBASIC9.3□□□□□ -0.92
Usp40Q8BWR4 AC135119.1-202ENSMUST00000228435 2203 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Mtpap-201ENSMUST00000025077 2651 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Vmn1r86-204ENSMUST00000227700 5487 ntAPPRIS ALT2 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Zfp638-203ENSMUST00000113836 4366 ntAPPRIS ALT2 TSL 5 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Cep295-203ENSMUST00000098979 7188 ntAPPRIS P2 TSL 5 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm38325-201ENSMUST00000194507 1377 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Skint10-201ENSMUST00000060327 1376 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm12608-201ENSMUST00000122013 1715 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Muc5ac-202ENSMUST00000155534 10752 ntAPPRIS ALT2 TSL 5 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm14772-201ENSMUST00000116562 514 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm8250-201ENSMUST00000117398 774 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm12656-201ENSMUST00000118149 577 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm13930-201ENSMUST00000118569 368 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm14375-201ENSMUST00000119490 855 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm14614-201ENSMUST00000119873 384 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Vmn1r-ps111-201ENSMUST00000121014 997 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Dnah2os-201ENSMUST00000124108 859 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Vmn1r208-201ENSMUST00000124841 927 ntAPPRIS P1 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm15122-201ENSMUST00000135434 462 ntTSL 2 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Scgn-202ENSMUST00000142826 470 ntTSL 5 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm6726-201ENSMUST00000172786 681 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm25244-201ENSMUST00000178089 132 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 1700054K02Rik-201ENSMUST00000181755 376 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm5260-201ENSMUST00000186157 949 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm28455-201ENSMUST00000189105 1290 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 9430092D12Rik-201ENSMUST00000194937 1274 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm37845-201ENSMUST00000194977 355 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Rpl9-ps8-201ENSMUST00000198343 562 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm44353-201ENSMUST00000200618 138 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm45587-201ENSMUST00000211548 765 ntTSL 5 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Tgm4-206ENSMUST00000215247 951 ntTSL 2 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm26797-203ENSMUST00000216452 706 ntTSL 5 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 CT030645.2-201ENSMUST00000224321 1012 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Olfr691-201ENSMUST00000057528 969 ntAPPRIS P1 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm22684-201ENSMUST00000082849 132 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm22351-201ENSMUST00000083925 107 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 1700057G04Rik-201ENSMUST00000098477 1052 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Prl2c3-201ENSMUST00000099805 857 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Sh3d19-203ENSMUST00000182666 6886 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Reep3-202ENSMUST00000217841 2925 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 D6Ertd474e-201ENSMUST00000100817 2149 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 F930017D23Rik-202ENSMUST00000213342 2141 ntTSL 5 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm10555-201ENSMUST00000193178 1791 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Gm45017-201ENSMUST00000206842 1777 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Sirpb1c-204ENSMUST00000108352 1436 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 1700014D04Rik-203ENSMUST00000180139 3231 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Utp14b-ps1-201ENSMUST00000197716 2265 ntBASIC9.29□□□□□ -0.92
Usp40Q8BWR4 Zfp266-201ENSMUST00000068296 2266 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Usp40Q8BWR4 AC159195.2-201ENSMUST00000223670 3757 ntBASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Ago3-201ENSMUST00000069097 15595 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Abcc12-203ENSMUST00000131423 4893 ntAPPRIS P1 TSL 5 BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 E330034G19Rik-204ENSMUST00000162224 1350 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gdpd4-202ENSMUST00000170049 1899 ntAPPRIS P1 TSL 5 BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Obox4-ps28-201ENSMUST00000175654 1362 ntBASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Bbx-203ENSMUST00000089404 4024 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Rsad2-201ENSMUST00000020970 3782 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Trappc13-203ENSMUST00000141557 3502 ntAPPRIS ALT1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm10773-201ENSMUST00000218071 3935 ntBASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Zfp78-202ENSMUST00000108559 1539 ntAPPRIS P4 TSL 2 BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm7489-201ENSMUST00000100666 1222 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm11920-201ENSMUST00000118491 563 ntBASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm12119-201ENSMUST00000136083 700 ntTSL 3 BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Rpl35a-ps5-201ENSMUST00000137013 333 ntBASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm15322-201ENSMUST00000142621 739 ntTSL 2 BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm12867-201ENSMUST00000151216 457 ntTSL 3 BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm4997-201ENSMUST00000154056 360 ntBASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm22588-201ENSMUST00000157510 140 ntBASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm6133-201ENSMUST00000164064 948 ntAPPRIS P1 BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm37689-201ENSMUST00000193139 275 ntBASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm38237-201ENSMUST00000193366 376 ntBASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm19253-201ENSMUST00000204279 307 ntBASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Vmn1r83-201ENSMUST00000086229 996 ntAPPRIS P1 BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Zc3h11a-204ENSMUST00000191896 4396 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 3110062G12Rik-201ENSMUST00000192113 1419 ntBASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Dnajb4-202ENSMUST00000050073 2464 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Gm4922-202ENSMUST00000216654 2357 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Olfr1426-205ENSMUST00000219155 2503 ntAPPRIS P1 TSL 5 BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Lrrc63-201ENSMUST00000022574 2517 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Ampd1-202ENSMUST00000155034 2913 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Zfp941-202ENSMUST00000106052 3851 ntAPPRIS P2 TSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Kcnc2-202ENSMUST00000218445 4033 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
Usp40Q8BWR4 Pcsk2os1-201ENSMUST00000126735 4233 ntTSL 1 (best) BASIC9.27□□□□□ -0.92
Usp40Q8BWR4 C8a-202ENSMUST00000064873 3617 ntAPPRIS P3 TSL 1 (best) BASIC9.27□□□□□ -0.93
Usp40Q8BWR4 Vmn1r22-201ENSMUST00000227342 3057 ntBASIC9.27□□□□□ -0.93
Usp40Q8BWR4 Vmn1r22-204ENSMUST00000228257 3079 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
Usp40Q8BWR4 Rpp40-201ENSMUST00000171686 4380 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
Usp40Q8BWR4 Gm22374-201ENSMUST00000104583 132 ntBASIC9.27□□□□□ -0.93
Usp40Q8BWR4 Sirpb1c-205ENSMUST00000108354 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
Usp40Q8BWR4 Gm11799-201ENSMUST00000116110 460 ntBASIC9.27□□□□□ -0.93
Usp40Q8BWR4 Gm14295-201ENSMUST00000118012 1213 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms