Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ddx56Q9D0R4 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddx56Q9D0R4 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddx56Q9D0R4 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddx56Q9D0R4 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ddx56Q9D0R4 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
Ddx56Q9D0R4 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.17■□□□□ 0.66
Ddx56Q9D0R4 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC19.17■□□□□ 0.66
Ddx56Q9D0R4 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ddx56Q9D0R4 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.17■□□□□ 0.66
Ddx56Q9D0R4 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ddx56Q9D0R4 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Gm7291-201ENSMUST00000199147 382 ntBASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Gm5953-201ENSMUST00000220644 2616 ntBASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC19.16■□□□□ 0.66
Ddx56Q9D0R4 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Fam105a-203ENSMUST00000226170 3043 ntBASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Gm6211-202ENSMUST00000167849 925 ntBASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ddx56Q9D0R4 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Ddx56Q9D0R4 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Ddx56Q9D0R4 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ddx56Q9D0R4 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.13■□□□□ 0.65
Ddx56Q9D0R4 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ddx56Q9D0R4 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddx56Q9D0R4 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms