Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Msh4Q99MT2 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Gm15853-202ENSMUST00000195518 2041 ntBASIC17.76■□□□□ 0.43
Msh4Q99MT2 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Msh4Q99MT2 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh4Q99MT2 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh4Q99MT2 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh4Q99MT2 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh4Q99MT2 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Msh4Q99MT2 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.75■□□□□ 0.43
Msh4Q99MT2 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Msh4Q99MT2 Gm6365-201ENSMUST00000054711 744 ntBASIC17.75■□□□□ 0.43
Msh4Q99MT2 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh4Q99MT2 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Msh4Q99MT2 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Msh4Q99MT2 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Msh4Q99MT2 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Msh4Q99MT2 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msh4Q99MT2 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.73■□□□□ 0.43
Msh4Q99MT2 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Msh4Q99MT2 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Gm7290-201ENSMUST00000104990 617 ntBASIC17.72■□□□□ 0.43
Msh4Q99MT2 Gm12918-201ENSMUST00000120234 636 ntBASIC17.72■□□□□ 0.43
Msh4Q99MT2 Gm15710-201ENSMUST00000121821 636 ntBASIC17.72■□□□□ 0.43
Msh4Q99MT2 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.72■□□□□ 0.43
Msh4Q99MT2 Gm5075-201ENSMUST00000196916 622 ntBASIC17.72■□□□□ 0.43
Msh4Q99MT2 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.72■□□□□ 0.43
Msh4Q99MT2 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.72■□□□□ 0.43
Msh4Q99MT2 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.72■□□□□ 0.43
Msh4Q99MT2 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Msh4Q99MT2 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Msh4Q99MT2 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 69.2 ms