Protein–RNA interactions for Protein: Q8BTS4

Nup54, Nuclear pore complex protein Nup54, mousemouse

Known RBP Predictions only

Length 510 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup54Q8BTS4 Gm27275-201ENSMUST00000184318 272 ntBASIC18.72■□□□□ 0.59
Nup54Q8BTS4 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Nup54Q8BTS4 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nup54Q8BTS4 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nup54Q8BTS4 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nup54Q8BTS4 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nup54Q8BTS4 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Nup54Q8BTS4 Flg-201ENSMUST00000050758 1488 ntBASIC18.71■□□□□ 0.59
Nup54Q8BTS4 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Nup54Q8BTS4 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nup54Q8BTS4 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nup54Q8BTS4 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.71■□□□□ 0.59
Nup54Q8BTS4 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Nup54Q8BTS4 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Nup54Q8BTS4 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nup54Q8BTS4 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nup54Q8BTS4 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Nup54Q8BTS4 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Nup54Q8BTS4 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nup54Q8BTS4 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nup54Q8BTS4 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
Nup54Q8BTS4 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup54Q8BTS4 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.7■□□□□ 0.58
Nup54Q8BTS4 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup54Q8BTS4 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup54Q8BTS4 Gm20760-201ENSMUST00000179197 648 ntBASIC18.7■□□□□ 0.58
Nup54Q8BTS4 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC18.7■□□□□ 0.58
Nup54Q8BTS4 Trmt13-210ENSMUST00000198454 880 ntBASIC18.7■□□□□ 0.58
Nup54Q8BTS4 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup54Q8BTS4 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.7■□□□□ 0.58
Nup54Q8BTS4 AC135637.1-201ENSMUST00000227750 365 ntBASIC18.7■□□□□ 0.58
Nup54Q8BTS4 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup54Q8BTS4 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Nup54Q8BTS4 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup54Q8BTS4 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup54Q8BTS4 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup54Q8BTS4 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup54Q8BTS4 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup54Q8BTS4 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup54Q8BTS4 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Nup54Q8BTS4 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup54Q8BTS4 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup54Q8BTS4 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Nup54Q8BTS4 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup54Q8BTS4 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup54Q8BTS4 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.68■□□□□ 0.58
Nup54Q8BTS4 Gm11249-201ENSMUST00000117071 859 ntBASIC18.68■□□□□ 0.58
Nup54Q8BTS4 Gm11927-201ENSMUST00000118472 759 ntBASIC18.68■□□□□ 0.58
Nup54Q8BTS4 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.68■□□□□ 0.58
Nup54Q8BTS4 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Nup54Q8BTS4 Zfp783-201ENSMUST00000095946 670 ntBASIC18.68■□□□□ 0.58
Nup54Q8BTS4 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup54Q8BTS4 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.68■□□□□ 0.58
Nup54Q8BTS4 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup54Q8BTS4 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup54Q8BTS4 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup54Q8BTS4 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup54Q8BTS4 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.66■□□□□ 0.58
Nup54Q8BTS4 Gm44878-201ENSMUST00000205812 1295 ntBASIC18.66■□□□□ 0.58
Nup54Q8BTS4 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup54Q8BTS4 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Nup54Q8BTS4 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup54Q8BTS4 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup54Q8BTS4 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Nup54Q8BTS4 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
Nup54Q8BTS4 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Gm38285-201ENSMUST00000192928 922 ntBASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Nup54Q8BTS4 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Nup54Q8BTS4 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Nup54Q8BTS4 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.64■□□□□ 0.58
Nup54Q8BTS4 Gm38345-201ENSMUST00000192635 1748 ntBASIC18.64■□□□□ 0.57
Nup54Q8BTS4 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Nup54Q8BTS4 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Nup54Q8BTS4 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Nup54Q8BTS4 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Nup54Q8BTS4 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms