Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx55Q6ZPL9 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx55Q6ZPL9 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx55Q6ZPL9 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx55Q6ZPL9 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ddx55Q6ZPL9 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ddx55Q6ZPL9 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
Ddx55Q6ZPL9 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx55Q6ZPL9 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx55Q6ZPL9 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
Ddx55Q6ZPL9 Gm23634-201ENSMUST00000175071 91 ntBASIC20.89■□□□□ 0.93
Ddx55Q6ZPL9 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC20.89■□□□□ 0.93
Ddx55Q6ZPL9 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC20.89■□□□□ 0.93
Ddx55Q6ZPL9 Gm18032-201ENSMUST00000222541 538 ntBASIC20.89■□□□□ 0.93
Ddx55Q6ZPL9 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ddx55Q6ZPL9 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ddx55Q6ZPL9 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx55Q6ZPL9 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx55Q6ZPL9 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx55Q6ZPL9 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx55Q6ZPL9 Mir2861-201ENSMUST00000175539 82 ntBASIC20.87■□□□□ 0.93
Ddx55Q6ZPL9 Gm6728-201ENSMUST00000178117 1065 ntBASIC20.87■□□□□ 0.93
Ddx55Q6ZPL9 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC20.87■□□□□ 0.93
Ddx55Q6ZPL9 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx55Q6ZPL9 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Ddx55Q6ZPL9 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC20.86■□□□□ 0.93
Ddx55Q6ZPL9 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx55Q6ZPL9 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC20.86■□□□□ 0.93
Ddx55Q6ZPL9 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ddx55Q6ZPL9 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx55Q6ZPL9 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.86■□□□□ 0.93
Ddx55Q6ZPL9 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx55Q6ZPL9 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx55Q6ZPL9 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx55Q6ZPL9 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Ddx55Q6ZPL9 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Ddx55Q6ZPL9 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx55Q6ZPL9 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx55Q6ZPL9 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx55Q6ZPL9 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx55Q6ZPL9 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx55Q6ZPL9 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC20.85■□□□□ 0.93
Ddx55Q6ZPL9 Gm45058-201ENSMUST00000205810 766 ntBASIC20.85■□□□□ 0.93
Ddx55Q6ZPL9 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
Ddx55Q6ZPL9 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Ddx55Q6ZPL9 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx55Q6ZPL9 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddx55Q6ZPL9 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Gm10013-201ENSMUST00000106074 672 ntBASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Gm6345-202ENSMUST00000180900 204 ntBASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Ddx55Q6ZPL9 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddx55Q6ZPL9 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddx55Q6ZPL9 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddx55Q6ZPL9 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddx55Q6ZPL9 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC20.83■□□□□ 0.93
Ddx55Q6ZPL9 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC20.83■□□□□ 0.93
Ddx55Q6ZPL9 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ddx55Q6ZPL9 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ddx55Q6ZPL9 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
Ddx55Q6ZPL9 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC20.83■□□□□ 0.92
Ddx55Q6ZPL9 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Ddx55Q6ZPL9 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
Ddx55Q6ZPL9 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
Ddx55Q6ZPL9 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx55Q6ZPL9 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC20.82■□□□□ 0.92
Ddx55Q6ZPL9 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx55Q6ZPL9 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx55Q6ZPL9 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
Ddx55Q6ZPL9 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx55Q6ZPL9 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx55Q6ZPL9 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddx55Q6ZPL9 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddx55Q6ZPL9 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms