Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CtcfQ61164 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
CtcfQ61164 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CtcfQ61164 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CtcfQ61164 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CtcfQ61164 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC20.04■□□□□ 0.8
CtcfQ61164 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.04■□□□□ 0.8
CtcfQ61164 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CtcfQ61164 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CtcfQ61164 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CtcfQ61164 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CtcfQ61164 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.03■□□□□ 0.8
CtcfQ61164 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.03■□□□□ 0.8
CtcfQ61164 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC20.03■□□□□ 0.8
CtcfQ61164 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CtcfQ61164 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.03■□□□□ 0.8
CtcfQ61164 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CtcfQ61164 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.03■□□□□ 0.8
CtcfQ61164 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CtcfQ61164 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CtcfQ61164 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CtcfQ61164 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.02■□□□□ 0.8
CtcfQ61164 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CtcfQ61164 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CtcfQ61164 Gm43702-201ENSMUST00000198772 2546 ntBASIC20.02■□□□□ 0.8
CtcfQ61164 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CtcfQ61164 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CtcfQ61164 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.02■□□□□ 0.8
CtcfQ61164 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CtcfQ61164 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CtcfQ61164 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.02■□□□□ 0.8
CtcfQ61164 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CtcfQ61164 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CtcfQ61164 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CtcfQ61164 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CtcfQ61164 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CtcfQ61164 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CtcfQ61164 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC20.01■□□□□ 0.79
CtcfQ61164 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.01■□□□□ 0.79
CtcfQ61164 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC20.01■□□□□ 0.79
CtcfQ61164 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC20.01■□□□□ 0.79
CtcfQ61164 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CtcfQ61164 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CtcfQ61164 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CtcfQ61164 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CtcfQ61164 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CtcfQ61164 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20■□□□□ 0.79
CtcfQ61164 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC20■□□□□ 0.79
CtcfQ61164 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CtcfQ61164 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC20■□□□□ 0.79
CtcfQ61164 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CtcfQ61164 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CtcfQ61164 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CtcfQ61164 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CtcfQ61164 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CtcfQ61164 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CtcfQ61164 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CtcfQ61164 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CtcfQ61164 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CtcfQ61164 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CtcfQ61164 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CtcfQ61164 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CtcfQ61164 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CtcfQ61164 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.99■□□□□ 0.79
CtcfQ61164 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.99■□□□□ 0.79
CtcfQ61164 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 103 ms