Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim40Q3UWA4 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim40Q3UWA4 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Gm38308-201ENSMUST00000194934 1809 ntBASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim40Q3UWA4 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim40Q3UWA4 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim40Q3UWA4 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Gm5576-201ENSMUST00000075809 1236 ntBASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim40Q3UWA4 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 61.9 ms