Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3aQ3ULJ3 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3aQ3ULJ3 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3aQ3ULJ3 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Upf3aQ3ULJ3 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3aQ3ULJ3 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.25■□□□□ 0.67
Upf3aQ3ULJ3 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3aQ3ULJ3 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3aQ3ULJ3 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.25■□□□□ 0.67
Upf3aQ3ULJ3 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3aQ3ULJ3 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3aQ3ULJ3 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3aQ3ULJ3 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3aQ3ULJ3 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Timm23-208ENSMUST00000226683 750 ntBASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3aQ3ULJ3 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Gm12382-201ENSMUST00000122005 922 ntBASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Gm3375-201ENSMUST00000203929 796 ntBASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3aQ3ULJ3 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Gm13559-201ENSMUST00000120476 863 ntBASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3aQ3ULJ3 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Upf3aQ3ULJ3 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC19.19■□□□□ 0.66
Upf3aQ3ULJ3 Gm11539-201ENSMUST00000119837 557 ntBASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms