Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col9a1Q05722 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Col9a1Q05722 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col9a1Q05722 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Col9a1Q05722 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col9a1Q05722 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col9a1Q05722 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.96■□□□□ 0.47
Col9a1Q05722 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col9a1Q05722 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col9a1Q05722 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col9a1Q05722 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col9a1Q05722 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.46
Col9a1Q05722 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Col9a1Q05722 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col9a1Q05722 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col9a1Q05722 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col9a1Q05722 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col9a1Q05722 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.95■□□□□ 0.46
Col9a1Q05722 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col9a1Q05722 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Col9a1Q05722 Gm27742-201ENSMUST00000184667 60 ntBASIC17.95■□□□□ 0.46
Col9a1Q05722 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Col9a1Q05722 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC17.95■□□□□ 0.46
Col9a1Q05722 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col9a1Q05722 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col9a1Q05722 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col9a1Q05722 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Col9a1Q05722 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col9a1Q05722 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col9a1Q05722 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col9a1Q05722 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col9a1Q05722 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC17.94■□□□□ 0.46
Col9a1Q05722 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
Col9a1Q05722 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.94■□□□□ 0.46
Col9a1Q05722 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col9a1Q05722 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col9a1Q05722 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col9a1Q05722 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col9a1Q05722 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col9a1Q05722 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col9a1Q05722 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col9a1Q05722 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col9a1Q05722 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col9a1Q05722 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Col9a1Q05722 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col9a1Q05722 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col9a1Q05722 Gm11434-201ENSMUST00000122379 629 ntBASIC17.93■□□□□ 0.46
Col9a1Q05722 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col9a1Q05722 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col9a1Q05722 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col9a1Q05722 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col9a1Q05722 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
Col9a1Q05722 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col9a1Q05722 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col9a1Q05722 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col9a1Q05722 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC17.92■□□□□ 0.46
Col9a1Q05722 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col9a1Q05722 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC17.92■□□□□ 0.46
Col9a1Q05722 Gm12085-201ENSMUST00000119263 940 ntBASIC17.92■□□□□ 0.46
Col9a1Q05722 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col9a1Q05722 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col9a1Q05722 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Col9a1Q05722 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col9a1Q05722 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col9a1Q05722 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col9a1Q05722 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col9a1Q05722 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Col9a1Q05722 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col9a1Q05722 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col9a1Q05722 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.91■□□□□ 0.46
Col9a1Q05722 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC17.91■□□□□ 0.46
Col9a1Q05722 Gm11950-201ENSMUST00000121615 838 ntBASIC17.91■□□□□ 0.46
Col9a1Q05722 Gm1401-201ENSMUST00000122048 772 ntBASIC17.91■□□□□ 0.46
Col9a1Q05722 Gm16061-201ENSMUST00000122167 857 ntBASIC17.91■□□□□ 0.46
Col9a1Q05722 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC17.91■□□□□ 0.46
Col9a1Q05722 Gm2651-201ENSMUST00000203560 838 ntBASIC17.91■□□□□ 0.46
Col9a1Q05722 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col9a1Q05722 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col9a1Q05722 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Col9a1Q05722 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Col9a1Q05722 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC17.9■□□□□ 0.46
Col9a1Q05722 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC17.9■□□□□ 0.46
Col9a1Q05722 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col9a1Q05722 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col9a1Q05722 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col9a1Q05722 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
Col9a1Q05722 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col9a1Q05722 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Col9a1Q05722 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Col9a1Q05722 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col9a1Q05722 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col9a1Q05722 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col9a1Q05722 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col9a1Q05722 Gm23935-201ENSMUST00000102303 57 ntBASIC17.89■□□□□ 0.45
Col9a1Q05722 Gm24270-201ENSMUST00000102326 57 ntBASIC17.89■□□□□ 0.45
Col9a1Q05722 Gm24245-201ENSMUST00000157318 57 ntBASIC17.89■□□□□ 0.45
Col9a1Q05722 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
Col9a1Q05722 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col9a1Q05722 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC17.89■□□□□ 0.45
Col9a1Q05722 Gm9449-201ENSMUST00000207265 1011 ntBASIC17.89■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms