Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
Msh3P13705 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
Msh3P13705 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Msh3P13705 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Msh3P13705 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh3P13705 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Msh3P13705 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh3P13705 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20.14■□□□□ 0.81
Msh3P13705 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC20.14■□□□□ 0.81
Msh3P13705 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Msh3P13705 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Msh3P13705 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh3P13705 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Msh3P13705 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh3P13705 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh3P13705 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh3P13705 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh3P13705 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh3P13705 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Msh3P13705 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Msh3P13705 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Msh3P13705 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh3P13705 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Msh3P13705 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Msh3P13705 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.13■□□□□ 0.81
Msh3P13705 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh3P13705 Gm5828-201ENSMUST00000071842 1860 ntBASIC20.13■□□□□ 0.81
Msh3P13705 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.13■□□□□ 0.81
Msh3P13705 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh3P13705 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh3P13705 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh3P13705 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.12■□□□□ 0.81
Msh3P13705 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh3P13705 Gm44549-201ENSMUST00000208351 577 ntBASIC20.12■□□□□ 0.81
Msh3P13705 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.12■□□□□ 0.81
Msh3P13705 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC20.12■□□□□ 0.81
Msh3P13705 Rab3c-203ENSMUST00000224180 967 ntBASIC20.12■□□□□ 0.81
Msh3P13705 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh3P13705 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh3P13705 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh3P13705 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh3P13705 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh3P13705 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh3P13705 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh3P13705 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.11■□□□□ 0.81
Msh3P13705 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Msh3P13705 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.11■□□□□ 0.81
Msh3P13705 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Msh3P13705 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Msh3P13705 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Msh3P13705 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh3P13705 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh3P13705 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh3P13705 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC20.1■□□□□ 0.81
Msh3P13705 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh3P13705 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC20.1■□□□□ 0.81
Msh3P13705 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh3P13705 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh3P13705 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh3P13705 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh3P13705 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Msh3P13705 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh3P13705 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Msh3P13705 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Msh3P13705 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Msh3P13705 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh3P13705 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh3P13705 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh3P13705 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Msh3P13705 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC20.09■□□□□ 0.81
Msh3P13705 AC122769.4-201ENSMUST00000228166 901 ntBASIC20.09■□□□□ 0.81
Msh3P13705 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh3P13705 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Msh3P13705 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh3P13705 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Msh3P13705 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Msh3P13705 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh3P13705 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Msh3P13705 Fst-202ENSMUST00000223640 2612 ntBASIC20.08■□□□□ 0.81
Msh3P13705 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh3P13705 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Msh3P13705 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh3P13705 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh3P13705 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh3P13705 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Msh3P13705 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC20.08■□□□□ 0.81
Msh3P13705 Wnt10b-205ENSMUST00000226846 1204 ntBASIC20.08■□□□□ 0.81
Msh3P13705 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Msh3P13705 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh3P13705 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh3P13705 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh3P13705 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh3P13705 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.08■□□□□ 0.8
Msh3P13705 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh3P13705 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh3P13705 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh3P13705 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh3P13705 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh3P13705 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh3P13705 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms