Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 4933411E08Rik-201ENSMUST00000217950 1689 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Use1Q9CQ56 Smc5-201ENSMUST00000087556 5683 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
Use1Q9CQ56 Bbx-201ENSMUST00000066037 4523 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Pcdh15-204ENSMUST00000105426 6802 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 1810018F18Rik-202ENSMUST00000189546 1447 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Ube4a-201ENSMUST00000117506 6039 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Dock7-214ENSMUST00000205650 6297 ntAPPRIS P3 TSL 5 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Ikzf3-201ENSMUST00000103141 3658 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Ifi207-202ENSMUST00000127730 3145 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 1700014D04Rik-203ENSMUST00000180139 3231 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 2700078F05Rik-201ENSMUST00000194331 3244 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Prep-201ENSMUST00000099858 10933 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Clock-205ENSMUST00000202651 9744 ntAPPRIS P3 TSL 2 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Anapc10-203ENSMUST00000210812 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Vmn1r181-204ENSMUST00000227637 4587 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Igkv14-126-201ENSMUST00000103310 358 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm22439-201ENSMUST00000104048 132 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Kat6b-203ENSMUST00000112458 997 ntTSL 5 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Tpk1-203ENSMUST00000114644 2148 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm11796-201ENSMUST00000120208 972 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm12321-201ENSMUST00000121485 804 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm5809-201ENSMUST00000121854 529 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Rapgef4os1-201ENSMUST00000126462 638 ntTSL 3 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm5834-201ENSMUST00000126680 1026 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm13362-201ENSMUST00000137186 839 ntTSL 3 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 1700061H18Rik-201ENSMUST00000139488 634 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Btf3-205ENSMUST00000152704 888 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm13629-202ENSMUST00000152740 645 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm13322-201ENSMUST00000152803 246 ntTSL 5 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 AU015336-201ENSMUST00000159040 849 ntTSL 5 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm6061-201ENSMUST00000175860 492 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm27159-201ENSMUST00000185132 432 ntTSL 5 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 1700003I22Rik-201ENSMUST00000186048 424 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm37669-201ENSMUST00000192184 820 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Ighv1-38-201ENSMUST00000192755 349 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm6077-201ENSMUST00000196008 499 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 C920008G01Rik-201ENSMUST00000196756 380 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm18430-201ENSMUST00000197534 682 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm42823-201ENSMUST00000197975 256 ntTSL 3 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Chil5-203ENSMUST00000200146 1296 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm43812-202ENSMUST00000202701 581 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Cd69-203ENSMUST00000204411 560 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 1600027J07Rik-201ENSMUST00000209501 489 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 AC154816.1-201ENSMUST00000222688 634 ntTSL 3 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 AC118006.3-201ENSMUST00000223948 1176 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 AC187103.4-201ENSMUST00000225399 300 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 AC134869.2-201ENSMUST00000225788 421 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 AC139209.2-201ENSMUST00000227680 1208 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 CT025630.2-201ENSMUST00000228293 487 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Olfr195-201ENSMUST00000075381 995 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Rpl31-ps20-201ENSMUST00000080982 378 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Ppp1r3b-201ENSMUST00000070481 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Zfp760-201ENSMUST00000073312 4209 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Tsix-201ENSMUST00000152916 4306 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm28440-201ENSMUST00000186328 1499 ntTSL 5 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Lipt1-201ENSMUST00000041621 1485 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm43330-201ENSMUST00000199706 2153 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Olfr1247-203ENSMUST00000216424 2164 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gm43483-201ENSMUST00000196724 2860 ntBASIC6.51□□□□□ -1.37
Use1Q9CQ56 Kmo-202ENSMUST00000097458 3672 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
Use1Q9CQ56 Gramd1b-204ENSMUST00000121357 7334 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Osbpl9-214ENSMUST00000160774 2765 ntTSL 5 BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Smurf2-206ENSMUST00000167787 2358 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm38156-201ENSMUST00000194601 2260 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm20121-201ENSMUST00000198547 1594 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 AC139754.2-201ENSMUST00000218037 1455 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gimap9-201ENSMUST00000054050 1384 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm22470-201ENSMUST00000104117 130 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 1700092K14Rik-201ENSMUST00000106604 395 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Mageb8-ps-201ENSMUST00000117228 1033 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm13414-201ENSMUST00000117516 727 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Dnase1-202ENSMUST00000120009 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Vmn1r-ps103-201ENSMUST00000120171 893 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm11383-201ENSMUST00000121346 807 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Mir1907-201ENSMUST00000122509 90 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm23079-201ENSMUST00000157847 117 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm23031-201ENSMUST00000157998 119 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm3326-201ENSMUST00000164656 1043 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm28041-201ENSMUST00000166080 779 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm27158-201ENSMUST00000183813 238 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm5261-201ENSMUST00000185860 713 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm37152-201ENSMUST00000193369 1175 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm37017-201ENSMUST00000195266 747 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 4930425L21Rik-202ENSMUST00000205073 871 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
Use1Q9CQ56 A26c2-201ENSMUST00000207359 997 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
Use1Q9CQ56 A330076H08Rik-203ENSMUST00000208822 1164 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm36843-201ENSMUST00000209303 627 ntTSL 5 BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm39158-201ENSMUST00000210178 856 ntTSL 3 BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Olfr1251-203ENSMUST00000214750 1040 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
Use1Q9CQ56 AL713985.1-201ENSMUST00000219030 420 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm35638-201ENSMUST00000220724 652 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 CT030175.1-201ENSMUST00000220822 408 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 6030440G07Rik-201ENSMUST00000221849 1090 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
Use1Q9CQ56 AC134468.2-202ENSMUST00000222820 1120 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
Use1Q9CQ56 AC172989.1-201ENSMUST00000226387 513 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Gm4953-201ENSMUST00000077309 483 ntBASIC6.5□□□□□ -1.37
Use1Q9CQ56 Tcf7l2-209ENSMUST00000111656 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Mef2c-223ENSMUST00000199105 4361 ntTSL 5 BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Vmn2r9-201ENSMUST00000170419 2547 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
Use1Q9CQ56 Meis1-208ENSMUST00000177417 5308 ntTSL 5 BASIC6.5□□□□□ -1.37
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms